View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9219_low_27 (Length: 360)

Name: NF9219_low_27
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9219_low_27
NF9219_low_27
[»] scaffold0020 (1 HSPs)
scaffold0020 (10-352)||(158749-159091)


Alignment Details
Target: scaffold0020 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 159091 - 158749
Alignment:
Q  10 agaacctgtgaaatagtcacacaacagaaatgatgagggaattgtttttggttaggaaacaaatgctgagatagggttagaagtgtcaaaaatatcattt 109  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  159091 agaacctgtgaaatagtcacacaacagaaacgatgagggagttgtttttggttaggaaacaaatgctgagatagggttagaagtgtcaaaaatatcattt 158992  T
Q  110 aggatatgcgatctggtcagattatgttgcagaaatatgatcgggaatgtctagacttccggaaaagcgtagaattgtgtaatcctattatatgattctc 209  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  158991 aggatatgcgatctggtcagattgtgttccagaaatatgatcgggaatgtctagacttccggaaaagcgtagaattatgtaatcctattatatgattctc 158892  T
Q  210 gaagcacaattattttcctaatatatgattcttgatgttgtctgatcctaaatgcaaatggaaataagattgatgtggattactgcagggaatgtggatt 309  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  158891 gaagcacaattattttcctaatatatgattcttgatgttgtcggatcctaaatgcaaatggaaataagattgatgtggattactgcagggaatatggatt 158792  T
Q  310 gcattctcctacgacctcatccaatgagatcgacttctgtgct 352  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  158791 gcattctcctacgacctcatccaatgagatcgacttctgtgct 158749  T

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