View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9219_low_30 (Length: 328)

Name: NF9219_low_30
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9219_low_30
NF9219_low_30
[»] chr5 (10 HSPs)
chr5 (12-313)||(9002874-9003175)
chr5 (153-248)||(6296868-6296964)
chr5 (160-265)||(10635301-10635408)
chr5 (39-137)||(2905371-2905469)
chr5 (19-137)||(8548509-8548628)
chr5 (158-248)||(29814916-29815007)
chr5 (153-212)||(39107795-39107854)
chr5 (153-190)||(29859287-29859324)
chr5 (160-192)||(33674811-33674843)
chr5 (153-193)||(37322403-37322443)
[»] chr4 (7 HSPs)
chr4 (160-258)||(38020378-38020478)
chr4 (153-188)||(27112402-27112437)
chr4 (154-200)||(33801901-33801947)
chr4 (162-195)||(44286936-44286969)
chr4 (153-198)||(51421449-51421494)
chr4 (218-270)||(2097077-2097129)
chr4 (220-264)||(29728814-29728858)
[»] chr8 (5 HSPs)
chr8 (154-198)||(16622593-16622637)
chr8 (159-190)||(23689578-23689609)
chr8 (154-213)||(10995395-10995456)
chr8 (160-190)||(12165705-12165735)
chr8 (160-190)||(12410133-12410163)
[»] chr1 (11 HSPs)
chr1 (158-214)||(42535734-42535790)
chr1 (153-214)||(32398771-32398832)
chr1 (261-307)||(5130317-5130363)
chr1 (153-190)||(15535644-15535681)
chr1 (154-264)||(36472599-36472710)
chr1 (153-195)||(18635664-18635706)
chr1 (153-190)||(22544581-22544618)
chr1 (153-190)||(28308384-28308421)
chr1 (160-188)||(10799276-10799304)
chr1 (153-200)||(43534637-43534685)
chr1 (161-189)||(51697570-51697598)
[»] chr2 (10 HSPs)
chr2 (153-263)||(1652535-1652646)
chr2 (153-190)||(5251412-5251449)
chr2 (153-192)||(10223394-10223433)
chr2 (154-192)||(7648722-7648760)
chr2 (154-188)||(25728080-25728114)
chr2 (154-246)||(41508140-41508234)
chr2 (160-200)||(13336239-13336279)
chr2 (218-258)||(14195204-14195244)
chr2 (164-200)||(18283819-18283855)
chr2 (173-264)||(32103577-32103669)
[»] chr3 (7 HSPs)
chr3 (154-248)||(50574742-50574840)
chr3 (153-188)||(48308089-48308124)
chr3 (153-187)||(40111767-40111801)
chr3 (159-202)||(54913673-54913718)
chr3 (154-187)||(10428021-10428054)
chr3 (155-191)||(32027253-32027289)
chr3 (152-188)||(41737939-41737975)
[»] chr7 (7 HSPs)
chr7 (159-264)||(33084908-33085015)
chr7 (154-188)||(37829999-37830033)
chr7 (154-210)||(7879048-7879105)
chr7 (156-214)||(35451129-35451188)
chr7 (154-192)||(31939655-31939693)
chr7 (154-264)||(40778180-40778286)
chr7 (153-193)||(37882926-37882966)
[»] chr6 (8 HSPs)
chr6 (154-248)||(31957893-31957988)
chr6 (154-192)||(3535261-3535299)
chr6 (159-192)||(23402904-23402937)
chr6 (153-188)||(2477285-2477320)
chr6 (153-198)||(7099695-7099741)
chr6 (153-198)||(8794889-8794935)
chr6 (160-188)||(3004848-3004876)
chr6 (161-193)||(30851475-30851507)
[»] scaffold0179 (1 HSPs)
scaffold0179 (153-192)||(31014-31053)
[»] scaffold0071 (1 HSPs)
scaffold0071 (154-188)||(63452-63486)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 9003175 - 9002874
Alignment:
Q  12 tgttacctattttaacttccttttttccattctatttggagaaaggaaggcttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003175 tgttacctattttaacttccttttttccattctatttggagaaaggaaggtttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaa 9003076  T
Q  112 tcaattgattttacaactaatctattcatgnnnnnnnnnngtaatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttga 211  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9003075 tcaattgattttacaactaatctattcatgttttttttttgtaatgacaaatgttagtaattagttgttagattagtttttctccttcgcttgggtttga 9002976  T
Q  212 accggtacctccaactcctcaacccttagctcaaacctgttcagctatccaactaatctatttatggtgctgtttatatttgttataattttagttgctt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9002975 accggtacctccaactcctcaacccttagctcaaacctgttcagctatccaactaatctatttatggtgttgtttatatttgttataattttagttgctt 9002876  T
Q  312 tt 313  Q
    ||    
T  9002875 tt 9002874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 6296964 - 6296868
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaa-ccggtacctccaactcctcaacccttagctcaaacc 248  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||| |  |||||||||| || | ||||||||||||| | |||||||||||||||    
T  6296964 taatggcaaatgttagtaattagttgttagattagtttttctcctttgtctgggtttgaacccagaacctccaactccttatcccttagctcaaacc 6296868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 10635301 - 10635408
Alignment:
Q  160 aaatgttagtaattagttgttagattaattttt-ctccttcgcttgggtttgaa-ccggtacctccaactcctcaacccttagctcaaacctgttcagct 257  Q
    |||||||||||||||||| |||||| | ||||| |||||||||  ||||||||| || | ||||||||||||| | ||||||||||||||| ||| ||||    
T  10635301 aaatgttagtaattagttcttagatcatttttttctccttcgcccgggtttgaagccaggacctccaactccttatcccttagctcaaaccagttgagct 10635400  T
Q  258 atccaact 265  Q
    | ||||||    
T  10635401 acccaact 10635408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 2905371 - 2905469
Alignment:
Q  39 cattctatttggagaaaggaaggcttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaatcaattgattttacaactaatctatt 137  Q
    ||||||| |||| |||||||| ||||||| |||| |||||||||  |||| ||||||||| || | | |||||| |||| |||||||||||||||||||    
T  2905371 cattctagttggtgaaaggaatgcttgttattacatatagatcttctcacttaaggttgtgatttatcatcaattaattaattttacaactaatctatt 2905469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 8548509 - 8548628
Alignment:
Q  19 tattttaacttccttttttc-cattctatttggagaaaggaaggcttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaatcaatt 117  Q
    ||||| |||||||| ||||  ||||||||||||| |||||||||||||||||||  || ||||||  |||| ||||||| | ||| ||  ||||||| ||    
T  8548509 tatttaaacttcctattttggcattctatttggataaaggaaggcttgttgttaagtacagatcttctcacttaaggttatgatgatttctcaatcattt 8548608  T
Q  118 gattttacaactaatctatt 137  Q
    | ||||||||||||| ||||    
T  8548609 gcttttacaactaatatatt 8548628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 29814916 - 29815007
Alignment:
Q  158 acaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaacc-ggtacctccaactcctcaacccttagctcaaacc 248  Q
    ||||||||||||||||| |||||| |||| ||||||||||| | |  ||||||||||  | ||||||||||||| | |||||||||||||||    
T  29814916 acaaatgttagtaattatttgttacattagtttttctcctttgttcaggtttgaacctaggacctccaactccttatcccttagctcaaacc 29815007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 39107854 - 39107795
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaa 212  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||  |||||||||||    
T  39107854 taatggcaaatgttagtaattagttgttagaatagtttttctccttcagttgggtttgaa 39107795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 29859324 - 29859287
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaattt 190  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29859324 taatgtcaaatgttagtaattagttgttagattaattt 29859287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 33674843 - 33674811
Alignment:
Q  160 aaatgttagtaattagttgttagattaattttt 192  Q
    |||||||||||||||||||||||||||||||||    
T  33674843 aaatgttagtaattagttgttagattaattttt 33674811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 37322403 - 37322443
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaatttttc 193  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  37322403 taatgataaatgttagtaattagttgttaaattaatttttc 37322443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 38020478 - 38020378
Alignment:
Q  160 aaatgttagtaattagttgttagattaattttt-ctccttcgcttgggtttgaaccg-gtacctccaactcctcaacccttagctcaaacctgttcagct 257  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||   |||||||||||  | ||||||||||||| ||||||||||||||||| ||| ||||    
T  38020478 aaatgttagtaatcagttgttagattaatatttactccttcgtccgggtttgaaccttggacctccaactccttaacccttagctcaaaccagttgagct 38020379  T
Q  258 a 258  Q
    |    
T  38020378 a 38020378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 27112402 - 27112437
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaat 188  Q
    |||||||||||||||||||||| |||||||||||||    
T  27112402 taatgacaaatgttagtaattaattgttagattaat 27112437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 33801901 - 33801947
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaatttttctccttcg 200  Q
    |||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  33801901 aatgaccaatattagtaattagttgttagattactttttttccttcg 33801947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 44286969 - 44286936
Alignment:
Q  162 atgttagtaattagttgttagattaatttttctc 195  Q
    |||||||||||| |||||||||||||||||||||    
T  44286969 atgttagtaatttgttgttagattaatttttctc 44286936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 51421449 - 51421494
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaatttttctcctt 198  Q
    ||||||||| |||||||||||| |||||| |||| |||||||||||    
T  51421449 taatgacaactgttagtaattaattgttatattagtttttctcctt 51421494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 2097129 - 2097077
Alignment:
Q  218 acctccaactcctcaacccttagctcaaacctgttcagctatccaactaatct 270  Q
    ||||||||||||| ||||||||||||||||  ||| ||||| ||||| |||||    
T  2097129 acctccaactccttaacccttagctcaaactagttgagctacccaaccaatct 2097077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 29728814 - 29728858
Alignment:
Q  220 ctccaactcctcaacccttagctcaaacctgttcagctatccaac 264  Q
    ||||||||||| ||||||||||||||||| ||| ||||| |||||    
T  29728814 ctccaactccttaacccttagctcaaaccagttgagctacccaac 29728858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 16622593 - 16622637
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaatttttctcctt 198  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  16622593 aatgacaaatgttagtaattagttgttagattagtttttctcctt 16622637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 190
Target Start/End: Original strand, 23689578 - 23689609
Alignment:
Q  159 caaatgttagtaattagttgttagattaattt 190  Q
    ||||||||||||||||||||||||||||||||    
T  23689578 caaatgttagtaattagttgttagattaattt 23689609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 10995456 - 10995395
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaa--tttttctccttcgcttgggtttgaac 213  Q
    |||| |||||||||||  ||||||||| ||||||  |||||||||||||| |||||||||||    
T  10995456 aatggcaaatgttagtggttagttgttggattaaattttttctccttcgcctgggtttgaac 10995395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 190
Target Start/End: Original strand, 12165705 - 12165735
Alignment:
Q  160 aaatgttagtaattagttgttagattaattt 190  Q
    |||||||||||||||||||||||||||||||    
T  12165705 aaatgttagtaattagttgttagattaattt 12165735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 190
Target Start/End: Original strand, 12410133 - 12410163
Alignment:
Q  160 aaatgttagtaattagttgttagattaattt 190  Q
    |||||||||||||||||||||||||||||||    
T  12410133 aaatgttagtaattagttgttagattaattt 12410163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 42535790 - 42535734
Alignment:
Q  158 acaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaacc 214  Q
    ||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||    
T  42535790 acaaatgttagtaattagttgttagattcgtttttcttcttcgtttgggtttgaacc 42535734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 32398832 - 32398771
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaacc 214  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||  || |||||||||    
T  32398832 taatggcaaatattagtaattagttgttagattagtttttctccttcgtctgagtttgaacc 32398771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 5130363 - 5130317
Alignment:
Q  261 caactaatctatttatggtgctgtttatatttgttataattttagtt 307  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||||    
T  5130363 caactaatctattgatggtgttgtttatatttgttataactttagtt 5130317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 15535644 - 15535681
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaattt 190  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15535644 taatgtcaaatgttagtaattagttgttagattaattt 15535681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 36472599 - 36472710
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaatttttc-tccttcgcttgggtttgaaccg-gtacctccaactcctcaacccttagctcaaacctgt 251  Q
    ||||||| ||||||||| ||||||||||||||| |||||| ||||| |   |||||||||||  | ||||||||||||| | ||||||||||| ||| ||    
T  36472599 aatgacagatgttagta-ttagttgttagattagtttttcctcctttgtccgggtttgaacccaggacctccaactccttatcccttagctcagaccagt 36472697  T
Q  252 tcagctatccaac 264  Q
    | ||||| |||||    
T  36472698 tgagctacccaac 36472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 18635664 - 18635706
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaatttttctc 195  Q
    ||||| |||||||||||||||||||||||||| | ||||||||    
T  18635664 taatggcaaatgttagtaattagttgttagatcagtttttctc 18635706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 22544581 - 22544618
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaattt 190  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  22544581 taatgtcaaatgttagtatttagttgttagattaattt 22544618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 28308384 - 28308421
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaattt 190  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  28308384 taatgacaaatgttagtaattagttgttaaactaattt 28308421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 188
Target Start/End: Complemental strand, 10799304 - 10799276
Alignment:
Q  160 aaatgttagtaattagttgttagattaat 188  Q
    |||||||||||||||||||||||||||||    
T  10799304 aaatgttagtaattagttgttagattaat 10799276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 43534637 - 43534685
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaa-tttttctccttcg 200  Q
    |||||| ||||||||||||||| ||||| |||||| |||||||||||||    
T  43534637 taatgataaatgttagtaattatttgtttgattaattttttctccttcg 43534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 51697570 - 51697598
Alignment:
Q  161 aatgttagtaattagttgttagattaatt 189  Q
    |||||||||||||||||||||||||||||    
T  51697570 aatgttagtaattagttgttagattaatt 51697598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 1652646 - 1652535
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaacc-ggtacctccaactcctcaacccttagctcaaacctgt 251  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||    |||||||||||  | |||||||| | || | ||||||||||||||| ||    
T  1652646 taatggcaaatgttggtaattagttgttagattagtttttctccttcatccgggtttgaacctaggacctccaatttcttatcccttagctcaaaccagt 1652547  T
Q  252 tcagctatccaa 263  Q
    | ||||| ||||    
T  1652546 tgagctacccaa 1652535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 5251412 - 5251449
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaattt 190  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5251412 taatgtcaaatgttagtaattagttgttagattaattt 5251449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 10223394 - 10223433
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaattttt 192  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  10223394 taatgacaaatgttagtaattagttgttaaattgattttt 10223433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 7648722 - 7648760
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaattttt 192  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  7648722 aatgacaaatattaataattagttgttagattaattttt 7648760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 25728114 - 25728080
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaat 188  Q
    |||||||||||||||| ||||||||||||||||||    
T  25728114 aatgacaaatgttagtgattagttgttagattaat 25728080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 41508140 - 41508234
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaat-ttttctccttcgcttgggtttgaac-cggtacctccaactcctcaacccttagctcaaa 246  Q
    ||||||||||||||| |||||||||||| |||||| ||| ||||||||   |||||||||| | | ||||| |||| || | |||||||||||||    
T  41508140 aatgacaaatgttagcaattagttgttatattaatatttactccttcgtccgggtttgaactcagaacctctaacttcttatcccttagctcaaa 41508234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 13336239 - 13336279
Alignment:
Q  160 aaatgttagtaattagttgttagattaatttttctccttcg 200  Q
    ||||| || |||||||||||||||||| |||||||||||||    
T  13336239 aaatgataataattagttgttagattagtttttctccttcg 13336279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 14195204 - 14195244
Alignment:
Q  218 acctccaactcctcaacccttagctcaaacctgttcagcta 258  Q
    ||||||||||||| ||||||||||||||||| ||| |||||    
T  14195204 acctccaactccttaacccttagctcaaaccagttgagcta 14195244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 18283855 - 18283819
Alignment:
Q  164 gttagtaattagttgttagattaatttttctccttcg 200  Q
    |||||||||||||||||||| || |||||||||||||    
T  18283855 gttagtaattagttgttagaatagtttttctccttcg 18283819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 32103669 - 32103577
Alignment:
Q  173 tagttgttagattaatttttctccttcgcttgggtttgaaccggt-acctccaactcctcaacccttagctcaaacctgttcagctatccaac 264  Q
    |||||||||||||| |||||| ||| ||    ||||||||||  | ||||||||||||||| ||||||||||||||  ||| ||||| |||||    
T  32103669 tagttgttagattactttttcacctccgtccaggtttgaacccatgacctccaactcctcatcccttagctcaaactagttgagctacccaac 32103577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 50574742 - 50574840
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaattttt---ctccttcgcttgggtttgaaccg-gtacctccaactcctcaacccttagctcaaacc 248  Q
    |||| |||||||||||||||||||||||||||| |||||   |||||||  | |||||| ||||  | ||||||||||||| | |||||||||||||||    
T  50574742 aatggcaaatgttagtaattagttgttagattagttttttttctccttcattcgggtttcaacccaggacctccaactccttatcccttagctcaaacc 50574840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 48308089 - 48308124
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaat 188  Q
    |||||||||||||||||| |||||||||||||||||    
T  48308089 taatgacaaatgttagtagttagttgttagattaat 48308124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 40111801 - 40111767
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaa 187  Q
    |||| ||||||||||||||||||||||||||||||    
T  40111801 taataacaaatgttagtaattagttgttagattaa 40111767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 54913673 - 54913718
Alignment:
Q  159 caaatgttagtaattagttgttagatta--atttttctccttcgct 202  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||    
T  54913673 caaatgttagtagttagttgttagattagtatttttctccttcgct 54913718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 10428021 - 10428054
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaa 187  Q
    ||||||||||||| ||||||||||||||||||||    
T  10428021 aatgacaaatgttcgtaattagttgttagattaa 10428054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 32027289 - 32027253
Alignment:
Q  155 atgacaaatgttagtaattagttgttagattaatttt 191  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  32027289 atgacaaatattagtaattagttgttagattagtttt 32027253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 41737939 - 41737975
Alignment:
Q  152 gtaatgacaaatgttagtaattagttgttagattaat 188  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  41737939 gtaataacaaatattagtaattagttgttagattaat 41737975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 33084908 - 33085015
Alignment:
Q  159 caaatgttagtaattagttgttagatta-atttttctccttcg-cttgggtttgaaccggtacctccaactcctcaacccttagctcaaacctgttcagc 256  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |  || ||| | || | ||||||||||||  | ||||||||||||||| ||| |||    
T  33084908 caaatgttagtaattagttgttagattagttttttctccttcgtccaggttttaacccaggacctccaactccatatcccttagctcaaaccagttgagc 33085007  T
Q  257 tatccaac 264  Q
    || |||||    
T  33085008 tacccaac 33085015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 37830033 - 37829999
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaat 188  Q
    |||||||||||||||||||||||||||||||||||    
T  37830033 aatgacaaatgttagtaattagttgttagattaat 37829999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 7879048 - 7879105
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaat-ttttctccttcgcttgggtttg 210  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||||  ||||||||    
T  7879048 aatgacaaatgttagcaattagttgttagattaatatttactccttcgtctgggtttg 7879105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 35451129 - 35451188
Alignment:
Q  156 tgacaaatgttagtaattagttgttagattaat-ttttctccttcgcttgggtttgaacc 214  Q
    |||||||||||| |||||||||||||||||||| ||| ||| |||| ||| |||||||||    
T  35451129 tgacaaatgttaataattagttgttagattaatatttactcattcgtttgagtttgaacc 35451188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 31939693 - 31939655
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaattttt 192  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  31939693 aatgacaaatattagtaattagttgttagattagttttt 31939655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 40778180 - 40778286
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaaccggtacctccaactcctcaacccttagctcaaacctgttc 253  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||| | | ||||||     |  | ||||||||||| | ||||||| ||||||| ||||    
T  40778180 aatgccaaatgttattaattagttgttcgattagtttttctcctttgttcgggttt----tgagagctccaactccttatcccttagttcaaaccagttc 40778275  T
Q  254 agctatccaac 264  Q
    ||||| |||||    
T  40778276 agctacccaac 40778286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 37882926 - 37882966
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaatttttc 193  Q
    ||||||||||| | |||||||||||||||||||| ||||||    
T  37882926 taatgacaaatatcagtaattagttgttagattagtttttc 37882966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 31957988 - 31957893
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaa-ccggtacctccaactcctcaacccttagctcaaacc 248  Q
    |||| ||||||||| | |||||||||||||||| |||||||||||    ||||||| || || | ||||||||||||| | |||||||||||||||    
T  31957988 aatggcaaatgttaatgattagttgttagattagtttttctcctttatctgggtttcaacccaggacctccaactccttatcccttagctcaaacc 31957893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 3535299 - 3535261
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaattttt 192  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3535299 aatgacaaatattagtaattagttgttagattaattttt 3535261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 23402937 - 23402904
Alignment:
Q  159 caaatgttagtaattagttgttagattaattttt 192  Q
    ||||||||||||||||||||||||||||||||||    
T  23402937 caaatgttagtaattagttgttagattaattttt 23402904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 2477320 - 2477285
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaat 188  Q
    |||||||||||||||||||||| |||||||||||||    
T  2477320 taatgacaaatgttagtaattaattgttagattaat 2477285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 7099695 - 7099741
Alignment:
Q  153 taatgacaaatgttagtaattagttgttag-attaatttttctcctt 198  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||||    
T  7099695 taatgacaaatattagtaattagttgttagtattaacttttctcctt 7099741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 8794935 - 8794889
Alignment:
Q  153 taatgacaaatgttagtaattagttgttag-attaatttttctcctt 198  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||||    
T  8794935 taatgacaaatattagtaattagttgttagtattaacttttctcctt 8794889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 3004848 - 3004876
Alignment:
Q  160 aaatgttagtaattagttgttagattaat 188  Q
    |||||||||||||||||||||||||||||    
T  3004848 aaatgttagtaattagttgttagattaat 3004876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 30851475 - 30851507
Alignment:
Q  161 aatgttagtaattagttgttagattaatttttc 193  Q
    ||||||||| |||||||||||||||||||||||    
T  30851475 aatgttagtgattagttgttagattaatttttc 30851507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 31014 - 31053
Alignment:
Q  153 taatgacaaatgttagtaattagttgttagattaattttt 192  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  31014 taatgacaaatattattaattagttgttagattaattttt 31053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 63486 - 63452
Alignment:
Q  154 aatgacaaatgttagtaattagttgttagattaat 188  Q
    |||||||||||||| ||||||||||||||||||||    
T  63486 aatgacaaatgttattaattagttgttagattaat 63452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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