View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9219_low_33 (Length: 295)

Name: NF9219_low_33
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9219_low_33
NF9219_low_33
[»] chr5 (9 HSPs)
chr5 (1-285)||(9003352-9003636)
chr5 (1-182)||(8677687-8677868)
chr5 (1-172)||(9074773-9074944)
chr5 (1-247)||(8644094-8644340)
chr5 (1-247)||(8636749-8636995)
chr5 (1-157)||(8535383-8535539)
chr5 (1-41)||(8641256-8641296)
chr5 (1-41)||(8548275-8548315)
chr5 (1-41)||(8528828-8528868)
[»] chr7 (1 HSPs)
chr7 (1-140)||(35779719-35779858)
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-41)||(4542-4582)
[»] chr6 (1 HSPs)
chr6 (1-39)||(16716229-16716267)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 9003352 - 9003636
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  9003352 ccttcaatgagattagacttggaatatgtggaattacttcaactaattttgattgagccccgtgaacttgaaaaactctgaatccatgtttctcgggttc 9003451  T
Q  101 atagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatattcaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003452 atagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatattcaggt 9003551  T
Q  201 atgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtccaagaccatactccttcataacccaagttgcaacaccaaa 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9003552 atgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtccaagaccatactccttcataacccaagttgcaacatcaaa 9003636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 8677687 - 8677868
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttc 100  Q
    |||||||||||||||||||||||| ||||||||||| |||| | ||||  ||   ||  | ||||| ||||||||||||||| |||||||||||||||||    
T  8677687 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttc 8677786  T
Q  101 atagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaacca 182  Q
    ||||||||  | ||||||| | || | ||| |||||||||  ||||| |||||||||  |||||||||||||||| ||||||    
T  8677787 atagtagataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgttttaccggccaacataaacca 8677868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 9074944 - 9074773
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttc 100  Q
    |||||||||| |||||||||||||||||||| |||||||||   || ||||| |||  ||  |||| |||||||||||||||||||| |||||| |||||    
T  9074944 ccttcaatgaaattagacttggaatatgtgggattacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttc 9074845  T
Q  101 atagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggcca 172  Q
    |||| |||  |||||||||||  | | ||| |||||||||  |||||  ||||||||  |||||| ||||||    
T  9074844 atagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggcca 9074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 8644094 - 8644340
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttc 100  Q
    |||||||||||||||||||||||| ||||||||||| |||| | ||||  ||   |   | ||||| |||||||||||||||  ||||||||| ||||||    
T  8644094 ccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttc 8644193  T
Q  101 atagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatattcaggt 200  Q
    ||||||||  | ||||||| | || | ||| |||||||||  ||| | |||||||||   ||||||||||||||| ||||||  |  | |  | ||||||    
T  8644194 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggt 8644293  T
Q  201 atgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtcca 247  Q
     |||||||||||| |    ||||||||||| ||||||||||||||||    
T  8644294 ctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtcca 8644340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 8636749 - 8636995
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttc 100  Q
    |||||||||||||||||||||||| ||||||||||| |||| | || |  ||   ||  |  |||| || |||||||||||| ||| |||||||||||||    
T  8636749 ccttcaatgagattagacttggaacatgtggaattatttcaacaaactcggaagaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttc 8636848  T
Q  101 atagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggccaacaaaaaccactagacggatattcaggt 200  Q
    ||||||||  | ||||||| | || | ||| |||||||||  ||| | |||||||||  ||||||||||||| || | ||||  |  | |  | ||||||    
T  8636849 atagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggccatcatataccataacgctgcgaatcaggt 8636948  T
Q  201 atgcccaaaggaccggcggaagtatcaatgctgtaaaccttagtcca 247  Q
     |||||||||||| | |  ||||||| ||| ||||||||||||||||    
T  8636949 ctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtcca 8636995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 8535383 - 8535539
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttc 100  Q
    |||||||||| |||||||||||||| ||||| |||||||||   || |||||   |  || || || ||||||||||| |||||||| |||||| |||||    
T  8535383 ccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttc 8535482  T
Q  101 atagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaa 157  Q
    ||||||||  ||||||||| | || | ||| |||||||||  |||||  ||||||||    
T  8535483 atagtagataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaa 8535539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8641256 - 8641296
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttca 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8641256 ccttcaatgagattagacttggaatatgtggaattacttca 8641296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8548315 - 8548275
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttca 41  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  8548315 ccttcaatgagattagacttggaatatgttgaattacttca 8548275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8528828 - 8528868
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttca 41  Q
    |||||||||| |||||||||||||| ||||| |||||||||    
T  8528828 ccttcaatgaaattagacttggaatgtgtgggattacttca 8528868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 35779719 - 35779858
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttcagctaattttgattgagcccggtgaactcgaaaaactttgaatccatgtttctcgggttc 100  Q
    |||||||||| |||||||||||||||||||||||||||||| |  |||||||  ||| ||   ||| ||||||||||||| |||||| |||||| |||||    
T  35779719 ccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaactttgtatccatatttctcaggttc 35779818  T
Q  101 atagtagactaaacaattgtacgattcataaaacaatatg 140  Q
    | ||||||  ||||||||| | || | ||| |||||||||    
T  35779819 aaagtagataaaacaattgcatgaatgatataacaatatg 35779858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4542 - 4582
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattacttca 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4542 ccttcaatgagattagacttggaatatgtggaattacttca 4582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16716229 - 16716267
Alignment:
Q  1 ccttcaatgagattagacttggaatatgtggaattactt 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16716229 ccttcaatgagattagacttggaatatgtggaattactt 16716267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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