View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_36 (Length: 290)
Name: NF9219_low_36
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 31335969 - 31335712
Alignment:
| Q |
17 |
ttctaaaataatttgatatataacagatacaactaattcatgagtcaaataagtggaattatgaataacacagtttcagatcctatatttaacaagctca |
116 |
Q |
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| T |
31335969 |
ttctaaaataatttgatatataacagatacaactaattcatgagtcaaataagtggaattatgaataacacagtttcagatcctatatttaacaagctca |
31335870 |
T |
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| Q |
117 |
atttttagctcaaattcaacttacttgattcatgaagcaattgaattagtttaatcaagtcaaatgtgaacttaataggaaaaacatgttcctgatcaag |
216 |
Q |
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| T |
31335869 |
atttttagctcaaattcaacttacttgattcatgaagcaattgaattagtttaaccaagtcaaatgtgaacttaataggaaaaacatgttcctgatcaag |
31335770 |
T |
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| Q |
217 |
ttggaagatgcataaatatggtatgttttaatcttcaagtcatttgcatggttcgagt |
274 |
Q |
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| T |
31335769 |
ttggaagatgcataaatatggtatgttttaatcttcaagtcatttgcatggttcgagt |
31335712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 10196927 - 10196877
Alignment:
| Q |
102 |
tatttaacaagctcaatttttagctcaaattcaacttacttgattcatgaa |
152 |
Q |
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| T |
10196927 |
tattgaacaagctcaattttcagctcaaaatcagcttatttgattcatgaa |
10196877 |
T |
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