View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_40 (Length: 249)
Name: NF9219_low_40
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 35336047 - 35335816
Alignment:
| Q |
17 |
atcagctcctatataaatcaagtctcacactcggtcactctcacaacatcatcccttcctttctcatttcctctctttctaggttattttctcttgcaaa |
116 |
Q |
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| T |
35336047 |
atcagctcctatataaatcaagtctcacactcggtcactctcacaacatcatcccttcctctctcatttcctctctttctaggttattttctcttacaaa |
35335948 |
T |
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| Q |
117 |
gaaaatggccaacactcttgcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctcttcacacaccaacacca |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35335947 |
gaaaatggccaaaactcttgcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctcttcacacaccaacacaa |
35335848 |
T |
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| Q |
217 |
cttcacccaccggctaaatcgcatcaccacta |
248 |
Q |
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| T |
35335847 |
cttcacccaccggctaaatcccctcaccacta |
35335816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 16591733 - 16591830
Alignment:
| Q |
136 |
gcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctcttcacacaccaacaccacttcacccaccggctaa |
233 |
Q |
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| T |
16591733 |
gcaatgttgctactcttactccaattaatttctttcaatgtatttggtgaagaacttgaatcccttcacgaaccaacaccacttcatccatcggctaa |
16591830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 16602303 - 16602400
Alignment:
| Q |
136 |
gcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctcttcacacaccaacaccacttcacccaccggctaa |
233 |
Q |
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| T |
16602303 |
gcaatgttgctactctttctccaattgatttctttcaatgtatttgctgaagaacttgaatctcttcatgaaccaacaccacttcatctaccggctaa |
16602400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 35327500 - 35327418
Alignment:
| Q |
119 |
aaatggccaacactcttgcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctctt |
201 |
Q |
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| T |
35327500 |
aaatggctaaaacccttgcaatgttgctactcttactccaactcatctctttcactacatttgcagaagagcttgaaactctt |
35327418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 5341769 - 5341854
Alignment:
| Q |
88 |
tctctttctaggttattttctcttgcaaagaaa-atggccaacactcttgcaatgttgctactcttactccaattaacctcgttca |
172 |
Q |
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| T |
5341769 |
tctctttcaaggtcgttttctcttacatagaaatatggccaaaactctagcatttttgctactcttactccaactaacctctttca |
5341854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 51457443 - 51457504
Alignment:
| Q |
134 |
ttgcaatgttgctactcttactccaattaa---cctcgttcattgcatttgctgaagagctt |
192 |
Q |
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| T |
51457443 |
ttgcaatgttgctactcttacttcaactaacctcctctttcattgcatttgctcaagagctt |
51457504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 41525338 - 41525283
Alignment:
| Q |
148 |
ctcttactccaattaacctcgttcattgcatttgctgaagagcttgaatctcttca |
203 |
Q |
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| T |
41525338 |
ctcttactccaaataacctccttcatagcatttgctgaagagctagaaactcttca |
41525283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 3545767 - 3545681
Alignment:
| Q |
103 |
ttttctcttgcaaagaaaa-tggccaacactcttgcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaaga |
188 |
Q |
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| T |
3545767 |
ttttctcttgcaaagaaaaatggccaaaactctagcatttttactacttctactccaactagcctatttcactgcatttgctgaaga |
3545681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 3549517 - 3549431
Alignment:
| Q |
103 |
ttttctcttgcaaagaaaa-tggccaacactcttgcaatgttgctactcttactccaattaacctcgttcattgcatttgctgaaga |
188 |
Q |
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| T |
3549517 |
ttttctcttgcaaagaaaaatggccaaaactctagcatttttactacttctactccaactagcctatttcactgcatttgctgaaga |
3549431 |
T |
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