View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_5 (Length: 703)
Name: NF9219_low_5
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 327 - 565
Target Start/End: Original strand, 1744486 - 1744724
Alignment:
| Q |
327 |
gtgtcacgtttaattttcaatgtagtgtttcttccaattatacccgataattaatattatgtgcacgaccaagttaatatattcgacttcagatttagga |
426 |
Q |
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| T |
1744486 |
gtgtcacgtttaattttcaatgtggtgtttcttccaattatacgcgataactaatcttatgtgcaccactaagttaa-atattccacttcacatttaggt |
1744584 |
T |
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| Q |
427 |
attagtgttaatagtgaaaatgagaacgtaaaatagtttacttgcataacaagtaatgtactggtagtgtaactaacttg-agttaattggttagacagt |
525 |
Q |
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| T |
1744585 |
attagtgttaatagtgaaaattagaaggtaaaatagtttacttgcataacaagtaatgtactagtagtgtaactaacttgcagtgaattggttagacagt |
1744684 |
T |
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| Q |
526 |
tagttagattgataactgaatctagtttgcgataatatag |
565 |
Q |
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| T |
1744685 |
ttgttagaatgacaactaaatctagtttgcaatcatatag |
1744724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 1744211 - 1744301
Alignment:
| Q |
17 |
acaatcataatttaaatgtgtttttcttacatggagcccaaaccttatccattttttagtcatttatatgaataatcaacacatgatttct |
107 |
Q |
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| T |
1744211 |
acaatcatgatttaaatgtgtttttcttacatggagcccaaaccttatccatattttagtcatttctgtgaatgtgcaacacatgatttct |
1744301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 1744322 - 1744379
Alignment:
| Q |
195 |
acaaagtaatttcaagaaggaaaaacacatttggaagtatttttattcattttaatga |
252 |
Q |
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| T |
1744322 |
acaaagtaatttcaagaaggaaaaacacatttggaagtatttttattcattttaatga |
1744379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 1744415 - 1744464
Alignment:
| Q |
259 |
tatttaaaaataatattttatctcaaaatgagggttacttgactctaaac |
308 |
Q |
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| T |
1744415 |
tatttaaaaataatatttaatctcaaaacgagggttacttgattctaaac |
1744464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 1749367 - 1749400
Alignment:
| Q |
17 |
acaatcataatttaaatgtgtttttcttacatgg |
50 |
Q |
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| T |
1749367 |
acaatcataatttaaatgtgtttttcttacatgg |
1749400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 1749465 - 1749500
Alignment:
| Q |
129 |
tcatcaacaacttttaaaactggtcatgctttccat |
164 |
Q |
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| T |
1749465 |
tcatcaacaacttgtaaaactggtcatgctttccat |
1749500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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