View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9219_low_7 (Length: 653)

Name: NF9219_low_7
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9219_low_7
NF9219_low_7
[»] chr4 (1 HSPs)
chr4 (7-653)||(47317526-47318175)


Alignment Details
Target: chr4 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Original strand, 47317526 - 47318175
Alignment:
Q  7 atggacatcataaataagacgtgcagatacctttctagattattttggtagtttgtgaagatgtttattaattggtgtatattgcttctaaaggaaaatc 106  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47317526 atggatatcataaataagacgcgcagatacctttctagattatcttggtagtttgtgaagatgtttattaattggtgtatatcgcttctaaaggaaaatc 47317625  T
Q  107 tttgattgttgctgtttatattatggatgaaccctttatctcatatccaattcaactcaaattgctaagttgccacttgcattaatacttgtcaatttaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47317626 tttgattgttgctgtttatattatggatgaaccctttatctcatatccaattcaactcaaattgctaagttgccacttgcattaatacttgtcaatttaa 47317725  T
Q  207 ttgctaaaataagaatttgaaaccatattatgtattcctatctggtgtttactggttactatttgatttcacttggcaggatatcaatactcaaggtctg 306  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47317726 ttgctaaaataagaatttgaaaccatgttatgtattcctatctggtgtttactggttactatttgatttcacttggcaggatatcaatactcaaggtctg 47317825  T
Q  307 tcgcggtcctacgccatcaccatcatactgtgtttatcaactctgataccgatgattttctagagttagtttccttggcaatgaagggg----ttccctt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    |||||||    
T  47317826 tcgcggtcctacgccatcaccatcatactgtgtttatcaactctgatactgatgattttctagagttagtttccttggcaatgaaggggttttttccctt 47317925  T
Q  403 ggttttacttgctctcagagtctagatcaaaattatgccactgattgccatatttcataaaagcaaaatctggaaattttgatgtatttttcccatattt 502  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47317926 ggttttacttgctctcagagtctagatcaaaattatgccattgattgccatatttcataaaagcaaaatctggaaattttgatgtatttttcccatattt 47318025  T
Q  503 agaaaatccgtaattataattatttcttctcataaagcatctctccttctttacttcgatgagatatataaaacattttagtttttaatacattctaaat 602  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47318026 agaaaatccgtaattataattatttcttctcataaagcatttccccttctttacttcgatgagatatataaaacattttag-ttttaatacattctaaat 47318124  T
Q  603 tttcaactcttaatatttaagttcgtcaattatactctatcatttagttta 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47318125 tttcaactcttaatatttaagttcgtcaattatactctatcatttagttta 47318175  T

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