View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_8 (Length: 545)
Name: NF9219_low_8
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 54725184 - 54724833
Alignment:
| Q |
10 |
tggacatcaggtaataatttatacttgtgatttgggagcatagcaataataatttgtatgaacaaaattgaacttgaaattgttcagggatgtgtgttca |
109 |
Q |
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| T |
54725184 |
tggacttcaggtaataatttatacttgtgatttgggagcatagcaataataatttgtatgaacaaaattgaacttgaaattgttcagggatgtgtgttca |
54725085 |
T |
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| Q |
110 |
caaaggatatcaacaaagcaatgatgattagtgatgcaatggaatcaggaacagttcagataaattctgccccagctcgtgggccagatcattttccctt |
209 |
Q |
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| T |
54725084 |
caaaggatatcaacaaagcaatgatgattagtgatgcaatggaatcaggaacagttcagataaattctgccccagctcgtgggccagatcattttccctt |
54724985 |
T |
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| Q |
210 |
tcaggtgaaacctacaaaatcaatccaattagtactt----ttgatatcatggtggatggctagaattacgacgagccagtgtgattctggcaaaaccat |
305 |
Q |
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| T |
54724984 |
tcaggtgaaacctacaaaatcaatccaattagtacgtttgattgatatcatggtagatggctagaattacaacgagccagtgtgattctggcaaaaccat |
54724885 |
T |
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| Q |
306 |
cttaatatcaaatacgcacatgttatttatttgatacaatttcgaaaataat |
357 |
Q |
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| T |
54724884 |
cttaatatcaaatatgcacatgttatttatttgatacaatttcgaaaataat |
54724833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 402 - 526
Target Start/End: Complemental strand, 54724790 - 54724666
Alignment:
| Q |
402 |
tgtctcatactatcaaatgttttcctattgacagggtataaaagacagtggaattggatcacaaggaattaccaacagcataaacatgatgacaaaaatc |
501 |
Q |
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| T |
54724790 |
tgtctcatactatcaaatgttttcctattgacagggtataaaagacagtggaattggatcacaaggaattaccaacagcataaacatgatgacaaaaatc |
54724691 |
T |
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| Q |
502 |
aaaactaccgtgataaacttgccaa |
526 |
Q |
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| T |
54724690 |
aaaactaccgtgataaacttgccaa |
54724666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 3009472 - 3009594
Alignment:
| Q |
94 |
cagggatgtgtgttcacaaaggatatcaacaaagcaatgatgattagtgatgcaatggaatcaggaacagttcagataaattctgccccagctcgtgggc |
193 |
Q |
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| T |
3009472 |
cagggatgtgtgtttacgaaagacataaacaaagcaatgttgataagtgatgcaatggagacaggaacagttcaaattaattctgcaccagctcgcggac |
3009571 |
T |
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| Q |
194 |
cagatcattttccctttcaggtg |
216 |
Q |
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| T |
3009572 |
ctgatcacttcccttttcaggtg |
3009594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 6523122 - 6523171
Alignment:
| Q |
22 |
aataatttatacttgtgatttgggagcatagcaataataatttgtatgaa |
71 |
Q |
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| T |
6523122 |
aataatttatacttgtgatttgcgagcatgtcagtaataatttgtatgaa |
6523171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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