View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_high_1 (Length: 1200)
Name: NF9220_high_1
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 1049; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1049; E-Value: 0
Query Start/End: Original strand, 11 - 1183
Target Start/End: Original strand, 45128869 - 45130040
Alignment:
| Q |
11 |
cagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45128869 |
cagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggt |
45128968 |
T |
|
| Q |
111 |
gaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45128969 |
gaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaa |
45129068 |
T |
|
| Q |
211 |
agaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129069 |
agaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaat |
45129168 |
T |
|
| Q |
311 |
nnnnnnnntcatcaatgtagcattacttaccgctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatcataagctttgcaagttgagga |
410 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129169 |
aaaaaaaatcatcaatgtagccttacttacggctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatcataagctttgcaagttgagga |
45129268 |
T |
|
| Q |
411 |
acataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaacatgtttcaaaaagcagtaaaggtgacaagtttacctgcataac |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129269 |
acataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaacatgtttcaaaaagcagtaaaggtgacaagtttacctgcataac |
45129368 |
T |
|
| Q |
511 |
tttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtcccttgcttaacaattcaaaaa |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129369 |
tttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtcccttgcttaacaattcaaaaa |
45129468 |
T |
|
| Q |
611 |
agcaccgtttcagattacaaaatatgtacagtacaataaaacnnnnnnnnnnnnnnnnnnactgatatcaaaagtatataacatgttaatgtttgacttt |
710 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45129469 |
agcaccgtttcagattacaaaatatgtacagtacaataaaaccatcatcatcatcat---actgatatcaaaagtatataacatgttaatgtttgacttt |
45129565 |
T |
|
| Q |
711 |
gagtagataataagacatggagaataataatgtaaagtttgacacaaaagttagagacatttttacaataaatcactgttttatctttatctaaactttt |
810 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129566 |
gagtagataataagacatggagaataataatgtaaagtttgatacaaaagttagagacatttttacaataaatcactgttttatctttatctaaactttt |
45129665 |
T |
|
| Q |
811 |
aaaaagcctaagaaagtataaaaacataagatatactactttt--tcctatagaagtaggatttaaaagaagtttctaaagatgaaacattttaagtacc |
908 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45129666 |
aaaaagcctaagaaagtataaaaacataagatatactactttttttcctatagaagtaggatttaaaagaagtttctaaagatgaaacatttttagtacc |
45129765 |
T |
|
| Q |
909 |
aaaaagattcaataataatgaatacctgtttcgtcgtcatttactgttgtggtataagcagaactacctttaacataagaaaatccaactccaactggtg |
1008 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45129766 |
aaaaagattcaataataatgaatacctgtttcgtcgtcatttactgttgtggtataagcagaactacctttaacataagaaaatccaactccagctggtg |
45129865 |
T |
|
| Q |
1009 |
tttccaaataaagcatgtttgcctctgtgacacaaaactaactcattcacttgagaagaattcaatgaatgcatgtcattgtggaagagaatgtgaaaat |
1108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129866 |
tttccaaataaagcatgtttgcctctgtgacacaaaactaaatcattcacttgagaagaattcaatgaatgcatgtcattgtggaagagaatgtgaaaat |
45129965 |
T |
|
| Q |
1109 |
aataaaggatacctttattccaactatgttcatttttaataagaaattcaccatttggtctaaagggtccatttt |
1183 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45129966 |
aataaagtatacctttattccaactatgttcatttttaataagaaaatcaccatttggtctaaagggtccatttt |
45130040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 7e-40; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 40280725 - 40280985
Alignment:
| Q |
12 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
111 |
Q |
| |
|
||||| ||||||||||| |||||||| || |||||||||||||||||||| | || |||||| | || || | ||| |||||||||||||| | | |
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| T |
40280725 |
agcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaacttgctggtttctctgcttacttggctcatgacctttgaacaaagcaggg |
40280824 |
T |
|
| Q |
112 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
211 |
Q |
| |
|
||| |||| ||||| ||||||||||||||| | || ||||| || || |||||||| |||||||||| ||||||||| | |||||| ||||| || |
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| T |
40280825 |
aaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgatatcaatccatgagaccagaa |
40280924 |
T |
|
| Q |
212 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
272 |
Q |
| |
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||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
40280925 |
gaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 970 - 1034
Target Start/End: Original strand, 40281848 - 40281912
Alignment:
| Q |
970 |
aactacctttaacataagaaaatccaactccaactggtgtttccaaataaagcatgtttgcctct |
1034 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||||||| |||||||| | ||||||||||||| |
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| T |
40281848 |
aactacctttagcataagaaaaccccactccaactggtgtctccaaatacaacatgtttgcctct |
40281912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 498 - 592
Target Start/End: Original strand, 40281445 - 40281539
Alignment:
| Q |
498 |
ttacctgcataactttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtccct |
592 |
Q |
| |
|
||||||||||||||||| || || | |||||||||| ||| | | ||||| || ||||||||||||||| || |||||| ||||| |||||||| |
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| T |
40281445 |
ttacctgcataactttctcctgtcaaaaacaaatctgtgtgtttgtattgggggaacttgttgaaccaatgtagcaagaacacaaggttgtccct |
40281539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1118 - 1181
Target Start/End: Original strand, 40281983 - 40282046
Alignment:
| Q |
1118 |
tacctttattccaactatgttcatttttaataagaaattcaccatttggtctaaagggtccatt |
1181 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||| ||| ||||| ||||| || |||||||| |
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|
| T |
40281983 |
tacctctattccaactatgctcatttttaatcagaacttctccattgggtctgaaaggtccatt |
40282046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
197 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
259 |
Q |
| |
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|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||| ||||||||| |
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|
| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
14 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
79 |
Q |
| |
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|||||| || || ||||||||||||||||||||||| ||||| |||||||| || |||||| |||| |
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|
| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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