View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_high_17 (Length: 437)
Name: NF9220_high_17
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 216 - 422
Target Start/End: Original strand, 31896242 - 31896453
Alignment:
| Q |
216 |
tacccagattgcaatcttttgcatttattcaagtcaagtagatacaactgtaaacatagtttgtcttggttacacactactacactcaagcatctaaaaa |
315 |
Q |
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| T |
31896242 |
tacccagattgcaatcttttgcatttattcaagtcaagtagatacaactgtaaacatagtttgtcttggttacacactactacactcaagcatctaaaaa |
31896341 |
T |
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| Q |
316 |
-----gaacttaatgaacacgttgaaagtggtaattgtgaaagggtccattctaattatacatacaagatcatataacataactgagcaaaagctcctat |
410 |
Q |
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| T |
31896342 |
ttatagaacttaatgaacatgttgaaagtggtaattgtgaaagggtccattctaattatacatacaagatcatataacataactgagcaaaagctcctat |
31896441 |
T |
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| Q |
411 |
tcggtcacatgt |
422 |
Q |
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| T |
31896442 |
tcggtcacatgt |
31896453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 31896000 - 31896204
Alignment:
| Q |
13 |
agattattcttgcgtttcgttaaagcatgattggtaatgaaaaaatattgtcttattgaaaaacatttagacatgtcaaaattaaatttatatctctaaa |
112 |
Q |
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| T |
31896000 |
agattattcttgcgtttcgttaaagcacgattggtaatgaaaaaacattatcttattgaaaaacatttagacatgttaaaattaaatttatatctctaaa |
31896099 |
T |
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| Q |
113 |
atgaatttcgacactttcaaaagtggaactagacatattggtgagtagaattaaaagtacatcttgaaaagttttttaaggcaatagtagtagctaggtc |
212 |
Q |
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| T |
31896100 |
atgaatttcgactcttccaaaagtgtaactagacatattggtgagtagaattaaaagtacatcttgaaaagttttttaaggcaatagtagtagctaggtc |
31896199 |
T |
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| Q |
213 |
aagta |
217 |
Q |
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| T |
31896200 |
aagta |
31896204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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