View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9220_high_20 (Length: 372)
Name: NF9220_high_20
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_high_20 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 33554488 - 33554121
Alignment:
| Q |
8 |
ggagcacagaatcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33554488 |
ggagcacagaatcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacg |
33554389 |
T |
|
| Q |
108 |
gtgttgaattctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatactccattgattctct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33554388 |
gtgttgaattctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatactccattgattctct |
33554289 |
T |
|
| Q |
208 |
cgatatcatcagccccgatgtgctcgcaatcgattactattcccctgcgtcttccgctgttgaagccatctcaaagtcgcttgcacaacaaacttctgtt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33554288 |
cgatatcatcagccccgatgtgctcgcaatcgattactattcccctgcgtcttccgctgttgaagccatctcaaagtcgcttgcacaacaaacttctgtt |
33554189 |
T |
|
| Q |
308 |
gcaattgttgacagt---gatgggacattcgtcggtgagatatcacccttcacccttgcttgttgtga |
372 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33554188 |
gcaattgttgacagtgatgatgggacattcgtcggtgagatatcacccttcacccttgcttgttgtga |
33554121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 33541264 - 33540903
Alignment:
| Q |
11 |
gcacagaatcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacggtg |
110 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||| ||| || ||||||| ||||||||||| |||||| |||| |
|
|
| T |
33541264 |
gcacaaaatcttgtggtgccaatttcgcagacaaaaaaaggtggcctttcaaggagaaaactgcagcagaagtcattaacaatcaacagccacaatggtg |
33541165 |
T |
|
| Q |
111 |
ttgaattctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatactccattgattctctcga |
210 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| | ||||| ||| |||| | |
|
|
| T |
33541164 |
ttgagttctgctggttaacacaagaggatgtgatcaggttcttgcttggttccattggccgcttcagtgcactccctgcacaatccatcgatcgtctcaa |
33541065 |
T |
|
| Q |
211 |
tatcatcagccccgatgtgctcgcaatcgattactattcccctgcgtcttccgctgttgaagccatctcaaagtcgcttgcacaacaaacttctgttgca |
310 |
Q |
| |
|
||| |||||| | ||||||||| | || ||||||| |||||| || ||||| ||||||||||||||||||||||| || |||||||||||||||| ||| |
|
|
| T |
33541064 |
tattatcagctcggatgtgctctccattgattactcttccccggcatcttctgctgttgaagccatctcaaagtccctcacacaacaaacttctgtcgca |
33540965 |
T |
|
| Q |
311 |
attgttgacagtgatgggacattcgtcggtgagatatcacccttcacccttgcttgttgtga |
372 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
33540964 |
attgtcgacggtgatgggacattcatcggtgagatatcacccttcacacttgcatgttgtga |
33540903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University