View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_10 (Length: 811)
Name: NF9220_low_10
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 678; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 49 - 799
Target Start/End: Original strand, 30897105 - 30897854
Alignment:
| Q |
49 |
ttttttctttagaggaagttatggcaatgcatatctttccatcactctatctcttttggatctctttctcttcaagcagtttcttttcacattttattat |
148 |
Q |
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| T |
30897105 |
ttttttctttagaggaagttatggcaatgcatatctttccatcactctatctcttttggatctctttctcttcaagcagtttcttttcacattttattat |
30897204 |
T |
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| Q |
149 |
tgaaaacagaaaatgattcatcattgctcatattttctttcttaatcagaatcaggaaagcttataacatggggttcgacagatgatctaggccaaagtt |
248 |
Q |
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| T |
30897205 |
tgaaaacagaaaatgattcatcattgctcatattttctttcttaatcagaatcaggaaagcttataacatggggttcgacagatgatctaggccaaagtt |
30897304 |
T |
|
| Q |
249 |
atgtaacgtcgggcaagcacggggtaatgcataaccatatagaacgatattgtctccnnnnnnnnngtctgtataccaacattgtataattttatttgtg |
348 |
Q |
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| T |
30897305 |
atgtgacgtccggcaagcacggggtaatgcataaccatatagaacgatattgtctcctttttttt-gtctgtataccaacattgtataattttatttgtg |
30897403 |
T |
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| Q |
349 |
aaggaaactccagagccgttctctcttccaaatgaagtgtctattgtaaaagctgcttctgcgtgggcacattgtgttgctgcgacaggtaacctttgtt |
448 |
Q |
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| T |
30897404 |
aaggaaactccagagccgttctctcttccaaatgaagtgtctattgtaaaagctgcttctgcgtgggcacattgtgttgccgcgacaggtaacctttgtt |
30897503 |
T |
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| Q |
449 |
tctttatcttgcttgcgtgagnnnnnnnttgatgtgatttacaagggataaattaaaaattaaaaattgaatccgtcgtaatgtcttgctggagaaatca |
548 |
Q |
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| T |
30897504 |
tctttatcttgcttgcgtgagataaaaattgatgtgatttacaagggataaattaaaaatttaaaattgaatccgtcgtaatgtcttgctggagaaatca |
30897603 |
T |
|
| Q |
549 |
tccaatacttactgactgttaatttcatgattatcgtagcagatgatgaaagtattattggcatgagctgtaacaacattatgcgcactgagttgttacg |
648 |
Q |
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| T |
30897604 |
tccaatacttactgactgttaatttcatgattatcgtagcagatgatgaaagtattattggcatgagctgtaacaacattatgcgcactgagttgttacg |
30897703 |
T |
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| Q |
649 |
gcattgaagaatgtgcctaaatgctaatctgaagcctctcttcatctttgattcaaaacaaaaaatcatgaatatcgaatatgattcaataaattatatt |
748 |
Q |
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| T |
30897704 |
gcgttgaagaatgtgcctaaatgctaatctgaagcctctcttcatctttgattcaaaacaaaaaatcatgaatatcgaatatgattcaataaattatatt |
30897803 |
T |
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| Q |
749 |
tatttgggtaagagattgtatctcttactggcatcatcttacaagtataat |
799 |
Q |
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| T |
30897804 |
tatttgggtaagagattgtatctcttactggcatcatcttacaagtataat |
30897854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 683
Target Start/End: Complemental strand, 43957438 - 43957395
Alignment:
| Q |
640 |
gttgttacggcattgaagaatgtgcctaaatgctaatctgaagc |
683 |
Q |
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| T |
43957438 |
gttgttacagctttgaagaatgtgcctatatgctaatctgaagc |
43957395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 590 - 636
Target Start/End: Complemental strand, 43957501 - 43957455
Alignment:
| Q |
590 |
gatgatgaaagtattattggcatgagctgtaacaacattatgcgcac |
636 |
Q |
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|||||||||||||| ||||||||||||| |||||||| | ||||||| |
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| T |
43957501 |
gatgatgaaagtataattggcatgagctataacaacaatctgcgcac |
43957455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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