View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_15 (Length: 672)
Name: NF9220_low_15
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 18 - 656
Target Start/End: Complemental strand, 28734669 - 28734017
Alignment:
| Q |
18 |
aatttttatgtctggtgccaaggatagtaatttagtaaaggtaaaagagctggtacaaagtaaattctatgaacaagaacataagtatataaactttgca |
117 |
Q |
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| T |
28734669 |
aatttttatgtctggtgccaaggatagtaatttagtaaaggtaaaagagctggtacaaagtaagttctatgaacaagaacataagtatataaactttgca |
28734570 |
T |
|
| Q |
118 |
tgtttaatgcacatgaataaaaaacaatataatcatagatttttgcatgtattgaacatgaaaataaagttataacaagaacataatcttacttgaattt |
217 |
Q |
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| T |
28734569 |
tgtttaatgcacatgaataaaaaacaatataatcatagatttttgcatgtattgaacatgaaaataaagttataacaagaacataatcttacttgaattt |
28734470 |
T |
|
| Q |
218 |
tgcatgttttaaaatgagcaatcatgctgttatttcccttaattttaatggaagaacaagataatgtaaaa--------------cagaaagaacaaaat |
303 |
Q |
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| T |
28734469 |
tgcatgttttaaaatgagcaatcatgctgttatttcccttaattttaatggaagaacaagataatgtaaaaaaaaaaatgtaaaacaggaagagcaaaat |
28734370 |
T |
|
| Q |
304 |
gtgatcaaaacaatgtatcttcaaaacatttgtgacactactttgttaaggcaaatattctccaaggattgtttgaatggtgatcaaaccagaggatgcc |
403 |
Q |
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| T |
28734369 |
gtgatcaaaacaatgtatcttcaaaacatttgtgacactactttgttaaggcaaatattctccaaggattgtttgaatggtgatcaaaccagaggatgcc |
28734270 |
T |
|
| Q |
404 |
caacatataataatataaagcaaacaagtacaatcaaacatgagttaaagcatttactcaacatggtaactaacaagaatgtaaagaagcatattataca |
503 |
Q |
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| T |
28734269 |
caacatataataatataaagcaaacaagtacaatcaaacatgagttaaagcatttactcaacatggtaattaacaagaacgtaaagaagcatattataca |
28734170 |
T |
|
| Q |
504 |
tagttacgcaaccttgcatatatctatctattgatgattcttcttccacaacactccaatcttcttcaacatggttgtatttttcttcttaggtgagtca |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28734169 |
tagttacgcaaccttgcatatatctatctattgatgattcttcttccacaacactccaatcttcttcaacatggttgtatttttcttcttaggtgagtca |
28734070 |
T |
|
| Q |
604 |
tcatcagtttcttccgaataaggtgaactcatcttgttaccaatagtagaatt |
656 |
Q |
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| T |
28734069 |
tcatcagtttcttctgaataaggtgaactcatcttgttaccaatagtagaatt |
28734017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 635
Target Start/End: Complemental strand, 22111065 - 22110965
Alignment:
| Q |
535 |
tgatgattcttcttccacaacactccaatcttcttcaacatggttgtatttttcttcttaggtgagtcatcatcagtttcttccgaataaggtgaactca |
634 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||| || | ||||||||||| || || |||||||| || ||||| |||| |||||| ||| |
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| T |
22111065 |
tgatgattcttcctccacaacactccaatcttcttcagcatgtttttgtttttcttctttggggactcatcatccgtgtcttctaaatagggtgaattca |
22110966 |
T |
|
| Q |
635 |
t |
635 |
Q |
| |
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| |
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|
| T |
22110965 |
t |
22110965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 635
Target Start/End: Original strand, 40583524 - 40583624
Alignment:
| Q |
535 |
tgatgattcttcttccacaacactccaatcttcttcaacatggttgtatttttcttcttaggtgagtcatcatcagtttcttccgaataaggtgaactca |
634 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||| || | ||||||||||| || || |||||||| || ||||| |||| |||||| ||| |
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| T |
40583524 |
tgatgattcttcctccacaacactccaatcttcttcagcatgtttttgtttttcttctttggggactcatcatccgtgtcttctaaatagggtgaattca |
40583623 |
T |
|
| Q |
635 |
t |
635 |
Q |
| |
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| |
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|
| T |
40583624 |
t |
40583624 |
T |
|
Back To:
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