View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_17 (Length: 655)
Name: NF9220_low_17
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 27 - 639
Target Start/End: Original strand, 35481780 - 35482392
Alignment:
| Q |
27 |
ccaccgaggtcgcctcagctacttcaccaatcttaaatctcaccacattaacaggtacttttaataaaacatcttcaacttcctccacttcagcctttcc |
126 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||||||||| |
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| T |
35481780 |
ccaccgaggtcgcctcagctacttcaccaatcttcaatctcaccacattaacaggtacttttaatacaacatcttcaaccttctcctcttcagcctttcc |
35481879 |
T |
|
| Q |
127 |
atttagctcctccaaaatcacgtttctagctttatcagactctacagcactcaacgcttgctgaagaaacgcagttcttggatcagaaggattcttattc |
226 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
35481880 |
attcaactcctccaaaatcacgtttctagctttatcagactctacagcactcaacgcttgttgaagaaatgcagttcttggatcagaaggattcttattc |
35481979 |
T |
|
| Q |
227 |
tccttactatgactgtaatacaaataaacaagacaatctcctgggagatgataatcaaaactttcccagtgcttttcgccccgtctgataaggaaatcct |
326 |
Q |
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|||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
35481980 |
tccttactttgtctgtaatacaaataagcaagacaatctcctgggagatgataatcaaaactttcccagtgcttttcgccgcgtctgctagggaaatcct |
35482079 |
T |
|
| Q |
327 |
ttatccaacgagctagatcttgagcacctttaccatcatatctcttctccacaatgaaacgtgctgcagcagcacgttgggaagtggagaggagacgaat |
426 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35482080 |
ttatcgaacgagctagatcttgagcacctttaccatcatatctcttctccacaatgaaacgcgctgcagcagcacgttgggaagtggagaggagacgaat |
35482179 |
T |
|
| Q |
427 |
ttcatataaaacttcagcaccaccgctatcaaagtaagatagaatctcttcatcagtgttggcctgtacaagagtgtcacgaacttgagttgcgactatg |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482180 |
ttcatataaaacttcagcaccaccgctatcaaagtaagatagaatctcttcatcagtgttggcctgtacaagagtgtcacgaacttgagttgcgactatg |
35482279 |
T |
|
| Q |
527 |
atacgattctgttcgacaccggtgatgccggtggtttcttcaagggtgggaggtgaaaagccttcacggaggagggaagtgatgagaggagcgtattcgt |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482280 |
atacgattctgttcgacaccggtgatgccggtggtttcttcaagggtgggaggtgaaaagccttcacggaggagggaagtgatgagaggagcgtattcgt |
35482379 |
T |
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| Q |
627 |
gccaggcaccgag |
639 |
Q |
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||||||||||||| |
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| T |
35482380 |
gccaggcaccgag |
35482392 |
T |
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