View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_18 (Length: 642)
Name: NF9220_low_18
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Complemental strand, 9545870 - 9545240
Alignment:
| Q |
1 |
gttattaccacggcaatgaacaccgaaatcggaaagatacagaagcaaatacacgaggcttcgttggaggaaagcgatactcccttgaagaagaagttag |
100 |
Q |
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| T |
9545870 |
gttattaccacggcaatgaacaccgaaatcggaaagatacagaagcaaatacacgaggcttcgttggaggaaagcgatactcccttgaagaagaagttag |
9545771 |
T |
|
| Q |
101 |
acgaatttggtggcaggcttacaacttctattggaatagtttgtcttgttgtttggattataaactacaaaaatttcatatcttgggatgttgttgatgg |
200 |
Q |
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| T |
9545770 |
acgaatttggtggcaggcttacaacttctattggaatagtttgtcttgttgtttggattataaactacaaaaatttcatatcttgggatgttgttgatgg |
9545671 |
T |
|
| Q |
201 |
atggcctacaaacattcaattttcttttcagaaatgcacttactatttcaaaattgctgttgctcttgctgtggctgcaattccagaaggtcttccggcg |
300 |
Q |
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| T |
9545670 |
atggcctacaaacattcaattttcttttcagaaatgcacttactatttcaaaattgctgttgctcttgctgtggctgcaattccagaaggtcttccggcg |
9545571 |
T |
|
| Q |
301 |
gttattacaacttgtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtaccactg |
400 |
Q |
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| T |
9545570 |
gttattacaacttgtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtaccactg |
9545471 |
T |
|
| Q |
401 |
tgatttgttcagataaaaccggtacactgactacaaatcaaatgtctgcgacggagttctttactttgggagggaaaacaactgcttgtagagtcattag |
500 |
Q |
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| T |
9545470 |
tgatttgttcagataaaaccggtacactgactacaaatcaaatgtctgcgacggagttctttactttgggagggaaaacaactgcttgtagagtcattag |
9545371 |
T |
|
| Q |
501 |
tgttgaagggacaacatatgatccaaaagatggagggattgttgattggacttgctataacatggatgctaacttgttagccatggcggaaatttgtgct |
600 |
Q |
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| T |
9545370 |
tgttgaagggacaacatatgatccaaaagatggagggattgttgattggacttgctataacatggatgctaacttgttagccatggcggaaatttgtgct |
9545271 |
T |
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| Q |
601 |
gtttgtaatgatgccggtgtttattttgatg |
631 |
Q |
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| T |
9545270 |
gtttgtaatgatgccggtgtttattttgatg |
9545240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 298 - 437
Target Start/End: Complemental strand, 40393817 - 40393678
Alignment:
| Q |
298 |
gcggttattacaacttgtttagcacttggtacaaggaaaatggcacaaaagaatgcaattgtgagaaagcttccaagtgttgaaactttgggatgtacca |
397 |
Q |
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||||| ||||| |||||| | ||||||||||| | |||||||| || |||||||| | || || ||||| |||||||||||||| |||| || || | |
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| T |
40393817 |
gcggtcattacgacttgtctcgcacttggtactcgcaaaatggcccagaagaatgccctggttaggaagctaccaagtgttgaaaccctgggttgcacaa |
40393718 |
T |
|
| Q |
398 |
ctgtgatttgttcagataaaaccggtacactgactacaaa |
437 |
Q |
| |
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| T |
40393717 |
ctgtgatatgttctgataaaactggtacactgactacaaa |
40393678 |
T |
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Back To:
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