View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9220_low_20 (Length: 611)

Name: NF9220_low_20
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9220_low_20
NF9220_low_20
[»] chr7 (9 HSPs)
chr7 (129-462)||(22608983-22609313)
chr7 (1-62)||(22608856-22608917)
chr7 (534-595)||(22609386-22609447)
chr7 (311-348)||(17202203-17202240)
chr7 (278-348)||(48243084-48243154)
chr7 (292-348)||(3392987-3393043)
chr7 (292-348)||(25620141-25620197)
chr7 (280-348)||(47849564-47849632)
chr7 (292-348)||(48243460-48243516)
[»] chr5 (11 HSPs)
chr5 (292-348)||(95289-95345)
chr5 (295-348)||(21209944-21209997)
chr5 (308-348)||(21209731-21209771)
chr5 (287-344)||(60087-60144)
chr5 (311-348)||(8081136-8081173)
chr5 (311-348)||(43117906-43117943)
chr5 (280-348)||(7369717-7369785)
chr5 (292-348)||(9368600-9368656)
chr5 (292-348)||(24528545-24528601)
chr5 (292-348)||(41666780-41666836)
chr5 (292-348)||(41667016-41667072)
[»] chr4 (5 HSPs)
chr4 (287-370)||(35609712-35609795)
chr4 (292-348)||(35788899-35788955)
chr4 (292-346)||(22231098-22231152)
chr4 (311-348)||(5398235-5398272)
chr4 (292-348)||(28245549-28245605)
[»] chr8 (7 HSPs)
chr8 (287-348)||(38475747-38475808)
chr8 (280-348)||(45031384-45031452)
chr8 (295-348)||(4828076-4828129)
chr8 (276-348)||(5675757-5675829)
chr8 (292-344)||(31827359-31827411)
chr8 (292-348)||(38447450-38447506)
chr8 (292-348)||(39052952-39053008)
[»] chr1 (6 HSPs)
chr1 (281-358)||(52907378-52907455)
chr1 (308-348)||(25255332-25255372)
chr1 (292-348)||(4113029-4113085)
chr1 (292-348)||(26346991-26347047)
chr1 (292-348)||(40079157-40079213)
chr1 (289-373)||(40316048-40316132)
[»] chr6 (4 HSPs)
chr6 (266-341)||(30711246-30711320)
chr6 (292-348)||(4868600-4868656)
chr6 (292-348)||(4868836-4868892)
chr6 (292-348)||(9705259-9705315)
[»] scaffold0129 (1 HSPs)
scaffold0129 (279-348)||(14295-14364)
[»] chr2 (4 HSPs)
chr2 (295-348)||(19191633-19191686)
chr2 (293-370)||(40149004-40149081)
chr2 (292-348)||(16419507-16419563)
chr2 (292-348)||(17719405-17719461)
[»] scaffold0692 (1 HSPs)
scaffold0692 (292-348)||(5777-5833)
[»] chr3 (3 HSPs)
chr3 (292-348)||(4155564-4155620)
chr3 (316-348)||(16926972-16927004)
chr3 (312-348)||(47064613-47064649)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 129 - 462
Target Start/End: Original strand, 22608983 - 22609313
Alignment:
Q  129 tggtaatctacaaactttcttaggaagtaatctaattagtgtgtcaaatgaaaaacttaatcactaatcatttgaagcataaatgacaaaccagaacata 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22608983 tggtaatctacaaactttcttaggaagtaatctaattagtgtgtcaaatgaaaaacttaatcactaatcatttgaagcataaatgacaaaccagaacata 22609082  T
Q  229 aaggtaccnnnnnnntgtgaatttacaagagtcttatatcagacaaaagatgatggtatgaacatgtgtttataagccgtgacaattctcatctcacaag 328  Q
    ||||||||       ||||||||||||||||||| |||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||    
T  22609083 aaggtaccaaaaaaatgtgaatttacaagagtctcatatcagacaaaagatg---gtatgaacatgtgtttatgagccgtgacaattctcatctcacaag 22609179  T
Q  329 ccggttttgtagggttgtgtaggatccaacgatggtttctaacattttcaaaattccactactatgaattacaataccaaattggataagataaagataa 428  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22609180 ccggttttgtagggttgtgtaggatccaacgatagtttctaacattttcaaaattccactactatgaattacaataccaaattggataagataaagataa 22609279  T
Q  429 acagtatcatcaaatctatgacatataatacaag 462  Q
    ||| ||||||||||||||||||||||||||||||    
T  22609280 acaatatcatcaaatctatgacatataatacaag 22609313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22608856 - 22608917
Alignment:
Q  1 atttaattgtgcacattagacaaagccagtaaaaccctattagattcttttgtgacttattg 62  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22608856 atttaattgtgcacattagacaaagccagtaaaaccctattagcttcttttgtgacttattg 22608917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 534 - 595
Target Start/End: Original strand, 22609386 - 22609447
Alignment:
Q  534 cctgttaatttgagaagggatctttgttcttgcttcaatctccatgagtaaaaccaaggact 595  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22609386 cctgttaacttgagaagggatctttgttcttgcttcaatctccatgagtaaaaccaaggact 22609447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 17202203 - 17202240
Alignment:
Q  311 caattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||||||||||||||||| |||||||||    
T  17202203 caattctcatctcacaagccggttttgtggggttgtgt 17202240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 48243154 - 48243084
Alignment:
Q  278 atgatggtatgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||| |||  |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  48243154 atgatggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 48243084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 3392987 - 3393043
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | || |||||||| ||||||||||| |||||| |||||||||    
T  3392987 atgtgtttataagtggggaaaattctcacctcacaagccgattttgtggggttgtgt 3393043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 25620141 - 25620197
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  25620141 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 25620197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 47849564 - 47849632
Alignment:
Q  280 gatggtatgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    ||||| |||||||||||||||||||  | | |||| |||| ||||||| |||||||||| || ||||||    
T  47849564 gatggcatgaacatgtgtttataagttggggcaatcctcacctcacaacccggttttgtgggcttgtgt 47849632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 48243516 - 48243460
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| ||||||| ||||||||||||||| |||||||||    
T  48243516 atgtgtttataagtgggggcaatcctcatcttacaagccggttttgtggggttgtgt 48243460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 95345 - 95289
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | |||||| ||||||||||||||||||||||| |||||||||    
T  95345 atgtgtttataagtggggacaatcctcatctcacaagccggttttgtggggttgtgt 95289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 21209997 - 21209944
Alignment:
Q  295 tgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    ||||||||||  | ||||||||||| |||||||||||||||||| |||||||||    
T  21209997 tgtttataagtggggacaattctcacctcacaagccggttttgtggggttgtgt 21209944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 21209771 - 21209731
Alignment:
Q  308 tgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  21209771 tgacaattctcacctcacaagccggttttgtggggttgtgt 21209731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 60087 - 60144
Alignment:
Q  287 tgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggtt 344  Q
    ||||||||||||||||||  | | |||| |||| |||||||||||||||||| |||||    
T  60087 tgaacatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggtt 60144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 8081173 - 8081136
Alignment:
Q  311 caattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  8081173 caatcctcatctcacaagccggttttgtggggttgtgt 8081136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 43117906 - 43117943
Alignment:
Q  311 caattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  43117906 caatcctcatctcacaagccggttttatagggttgtgt 43117943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 7369717 - 7369785
Alignment:
Q  280 gatggtatgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    ||||| ||||||| |||||||||||  | | || | |||| |||||||||||||||||| |||||||||    
T  7369717 gatggcatgaacaagtgtttataagtgggggcagtcctcacctcacaagccggttttgtggggttgtgt 7369785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 9368600 - 9368656
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  9368600 atgtgtttataagtggaggcaatcctcacctcacaagccggttttgtggggttgtgt 9368656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 24528545 - 24528601
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  24528545 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 24528601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 41666836 - 41666780
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  41666836 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 41666780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 41667072 - 41667016
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  41667072 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 41667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 287 - 370
Target Start/End: Complemental strand, 35609795 - 35609712
Alignment:
Q  287 tgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgtaggatccaacgatggtttctaa 370  Q
    |||||| |||||||||||  | | |||| |||| |||||||||||||||||| |||||||||| || ||||| ||| |||||||    
T  35609795 tgaacaagtgtttataagtggggccaatcctcacctcacaagccggttttgtggggttgtgtaagacccaaccatgatttctaa 35609712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 35788899 - 35788955
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| ||||||||||||||||||||||| |||||||||    
T  35788899 atgtgtttataagtgggggcaatcctcatctcacaagccggttttgtggggttgtgt 35788955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 22231152 - 22231098
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgt 346  Q
    |||||||||||||  | |||||| |||| |||||||||||||||||| |||||||    
T  22231152 atgtgtttataagtggggacaatcctcacctcacaagccggttttgtggggttgt 22231098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 5398272 - 5398235
Alignment:
Q  311 caattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  5398272 caatcctcatctcacaagccggttttgtggggttgtgt 5398235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 28245605 - 28245549
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  28245605 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 28245549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 38475747 - 38475808
Alignment:
Q  287 tgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||| |||||||||||  | | |||| |||| ||||||||||||||||||||||||||||    
T  38475747 tgaacaagtgtttataagtgggggcaatcctcacctcacaagccggttttgtagggttgtgt 38475808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 45031452 - 45031384
Alignment:
Q  280 gatggtatgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||| ||||||||| |||||||||| || | |||| |||| || |||||||||||||||| ||||||||    
T  45031452 gatgatatgaacatatgtttataagtcggggcaatcctcaccttacaagccggttttgtaaggttgtgt 45031384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 4828076 - 4828129
Alignment:
Q  295 tgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    ||||||||||  | |||||| |||| |||||||||||||||||| |||||||||    
T  4828076 tgtttataagtggggacaatcctcacctcacaagccggttttgtggggttgtgt 4828129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 5675829 - 5675757
Alignment:
Q  276 agatgatggtatgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||| |||  |||||||||||||  | ||||||||||| ||||||||| | |||||| | |||||||    
T  5675829 agatgatggtctgacaatgtgtttataagtagagacaattctcacctcacaagctgattttgtggagttgtgt 5675757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 31827359 - 31827411
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggtt 344  Q
    ||||||||||| || |||||||||||||||||| |||  |||||||| |||||    
T  31827359 atgtgtttatatgcggtgacaattctcatctcataagttggttttgtggggtt 31827411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 38447506 - 38447450
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  38447506 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 38447450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 39053008 - 39052952
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  39053008 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 39052952  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 281 - 358
Target Start/End: Original strand, 52907378 - 52907455
Alignment:
Q  281 atggtatgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgtaggatccaac 358  Q
    ||||| ||||||||||||||||||  | | |||| |||| ||||||||| |||||||| |||||||||| || |||||    
T  52907378 atggtttgaacatgtgtttataagtgggggcaatcctcacctcacaagctggttttgtggggttgtgtaagacccaac 52907455  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 25255332 - 25255372
Alignment:
Q  308 tgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  25255332 tgacaattctcacctcacaagccggttttgtggggttgtgt 25255372  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 4113085 - 4113029
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  4113085 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 4113029  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 26347047 - 26346991
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | |||||| |||| |||||||||| ||||||| |||||||||    
T  26347047 atgtgtttataagtggagacaatcctcacctcacaagcccgttttgtggggttgtgt 26346991  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 40079157 - 40079213
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  40079157 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 40079213  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 40316132 - 40316048
Alignment:
Q  289 aacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgtaggatccaacgatggtttctaacat 373  Q
    ||||||||||||||||  | | |||| |||| |||| |||||||||||||  ||||||||  |||||||| | | ||||||||||    
T  40316132 aacatgtgtttataagtggggtcaatcctcacctcataagccggttttgtgaggttgtgttagatccaaccacgatttctaacat 40316048  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 30711320 - 30711246
Alignment:
Q  266 atcagacaaaagatgatggtatgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagg 341  Q
    |||||||||||||| |||  |||||||||||||||||||  | |||||| |||| ||||||| ||| |||||||||    
T  30711320 atcagacaaaagat-atgtcatgaacatgtgtttataagtagagacaatcctcacctcacaaaccgattttgtagg 30711246  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 4868656 - 4868600
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  4868656 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 4868600  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 4868892 - 4868836
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  4868892 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 4868836  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 9705259 - 9705315
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  9705259 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 9705315  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 14295 - 14364
Alignment:
Q  279 tgatggtatgaacatgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    ||||||| |||  |||||||||||||  | ||||||  ||| |||||||||||||||||| |||||||||    
T  14295 tgatggtctgacaatgtgtttataagtggggacaatcatcacctcacaagccggttttgtggggttgtgt 14364  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 19191686 - 19191633
Alignment:
Q  295 tgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    ||||||||||  | |||||| |||| |||||||||||||||||| |||||||||    
T  19191686 tgtttataagtggggacaatcctcacctcacaagccggttttgtggggttgtgt 19191633  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 40149081 - 40149004
Alignment:
Q  293 tgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgtaggatccaacgatggtttctaa 370  Q
    ||||||||||||  | |||||| |||| ||||||||||| |||||| |||||||||  | |||||| ||| |||||||    
T  40149081 tgtgtttataagtggggacaatcctcacctcacaagccgattttgtggggttgtgttaggtccaaccatgatttctaa 40149004  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 16419507 - 16419563
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  16419507 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgt 16419563  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 17719405 - 17719461
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| |||| |||||||||||||||||| |||||||||    
T  17719405 atgtgtttataagtgggggcaatcctcacctcacaagccggttttgtcgggttgtgt 17719461  T

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Target: scaffold0692 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 5833 - 5777
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | | |||| ||||||||||||||||||||||  |||||||||    
T  5833 atgtgtttataagtgggggcaatcctcatctcacaagccggttttgcggggttgtgt 5777  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 4155564 - 4155620
Alignment:
Q  292 atgtgtttataagccgtgacaattctcatctcacaagccggttttgtagggttgtgt 348  Q
    |||||||||||||  | |||||| |||| |||| ||||||||||| |||||||||||    
T  4155564 atgtgtttataagtggggacaatcctcacctcaaaagccggttttttagggttgtgt 4155620  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 16927004 - 16926972
Alignment:
Q  316 ctcatctcacaagccggttttgtagggttgtgt 348  Q
    ||||||||||||||||||||||| |||||||||    
T  16927004 ctcatctcacaagccggttttgtggggttgtgt 16926972  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 47064613 - 47064649
Alignment:
Q  312 aattctcatctcacaagccggttttgtagggttgtgt 348  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  47064613 aattctcatctcacaagccggttttataggattgtgt 47064649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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