View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_21 (Length: 533)
Name: NF9220_low_21
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Complemental strand, 2020736 - 2020260
Alignment:
| Q |
11 |
cagagatgtgaagtattgtttttattaattaaagttgcatcgctgataattttacaactgtttcttgaggaaattcgaactcaacacttgaggttacaag |
110 |
Q |
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| T |
2020736 |
cagagatgtgaagtattgtttttattaattaaagttgcatcgctgataattttacaactgtttcttgaggaaattctaactcaacacttgaggttacaag |
2020637 |
T |
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| Q |
111 |
attaatctcttactaccaaacttgcacctcaagatatgatgtgaagtactaatataaatatgaatgtgttatacttatacttaatgtacccatgcatctt |
210 |
Q |
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| T |
2020636 |
attaatctcttactaccaaacttgcacctcaagatatgatgtgaagtactaatataaatatgaatgtattatacttatacttaatgtacccatgcatctt |
2020537 |
T |
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| Q |
211 |
actactacatcttcaaggaaacaatccaaaaaggaagcctccataaattcacagcacaaaagatctggaaaacaacaagaaaagtctttgactttctata |
310 |
Q |
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| T |
2020536 |
actaatacatcttcaaggaaacaatccaaaaaggaagcctccataaattcacagcacaaaagatctggaaaacaacaagaaaagtctttgactttctata |
2020437 |
T |
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| Q |
311 |
cagattgtagctcactaactaactaaaacacctactgtaactcaatgtaaatgaaatacgaacgaaaccaatgattggatcgaaaagcataaggctgcat |
410 |
Q |
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| T |
2020436 |
cagattgtagcacactaactaactaaaacacctactgtaactcactgtaaatgaaatacgaacgaaaccaatgattggatcgaaaagcataaagctgcat |
2020337 |
T |
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| Q |
411 |
gattttgaaagggacacttaacaacaaattagcgggtctcgatcccaagtaatatgacagcaaaaaatccacaatgc |
487 |
Q |
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| T |
2020336 |
gattttgaaagggacacttaacaacaaattagcgggtctccatcccaagtaatatgacagcaaaaaaaccacaatgc |
2020260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 494
Target Start/End: Complemental strand, 2015025 - 2014935
Alignment:
| Q |
404 |
gctgcatgattttgaaagggacacttaacaacaaattagcgggtctcgatcccaagtaatatgacagcaaaaaatccacaatgcgactacc |
494 |
Q |
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|||||| ||||||||| ||||||||||| ||||||||| |||||| | || |||||||||||||| ||||| |||||| | ||||||| |
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| T |
2015025 |
gctgcaggattttgaatgggacacttaaaaacaaattaaagggtcttggtcgaaagtaatatgacagaaaaaagaccacaacgtgactacc |
2014935 |
T |
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