View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_22 (Length: 505)
Name: NF9220_low_22
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 5 - 488
Target Start/End: Original strand, 3490134 - 3490617
Alignment:
| Q |
5 |
catcaatgaattctgaacgaaccaagatgtcgttggtcaaacacaggaaatcaactgattctgaggtccggatttctaatgtctcagacacgaccaaggt |
104 |
Q |
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| T |
3490134 |
catcaatgaattccaaaccaaccaagatgtcgttggtcaaacacaggaaatcaactgattctgaggtccggatttctaatgtctcagacacgaccaaggt |
3490233 |
T |
|
| Q |
105 |
cgttaaaactgaaccttgcgagctagttaaacctggcaaggaagttgtggtaaacaggaagaaaacatcactggccggtgtgaagcgattgcccctcctt |
204 |
Q |
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| T |
3490234 |
cgttaaaactgaaccttgcgagctagttaaacctggcaaggaagttgtggtaaacaggaagaaaacatcactggccggtgtgaagcgattgcccctcctt |
3490333 |
T |
|
| Q |
205 |
ccaaggtcgcagaattgctctacctataaaacaaggaagccagaaatttcatcaagttctaaggtggacactacaccgaaaccaatttccaagagggttg |
304 |
Q |
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| T |
3490334 |
ccaaggtcgcagaattgctctacctataaaacaaggaagccagaaatttcatcaagttctaaggtggacactacaccgaaaccaatttccaagagggttg |
3490433 |
T |
|
| Q |
305 |
gagcttcattaatatcaaatttcaagaaagaggaacttctattgaaatcaacctctcgaagggtgaaaactcatccagtatcaacttttcaattggccaa |
404 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3490434 |
gagcttcatcaatatcaaatttcaagaaagaggaacttctattgaaatcaacctctcgaagggtgaaaactcatccagtatcaacttttcaattggccaa |
3490533 |
T |
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| Q |
405 |
aacttcatcaaattccacttctaagaagacgcaaacttcatcgaagttttctgaaaagaatgtgacttcattgaatctagattc |
488 |
Q |
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| T |
3490534 |
aacttcatcaaattccacttctaagaagacgcaaatttcatcgaagttttctgaaaagaatgtgacttcattgaatctagattc |
3490617 |
T |
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