View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_24 (Length: 491)
Name: NF9220_low_24
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 34090487 - 34090935
Alignment:
| Q |
8 |
gagaagcagagaaagatatagtacacaacagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgca |
107 |
Q |
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| T |
34090487 |
gagaagcagagaaagatatagtacacaacagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgca |
34090586 |
T |
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| Q |
108 |
tgcttgatcaggtgcacacccgttttgagtatctgtgtttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcagtaact |
207 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34090587 |
tgtttgatcaggtgcacacccgttttgagtatctgtgtttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcaataact |
34090686 |
T |
|
| Q |
208 |
gtggctaccaccattaaggaacctctcatttgttccatccaatttccttgattgttttcatattcataccttgtgaattggttattagcccatgatcgtc |
307 |
Q |
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| T |
34090687 |
gtggctaccaccattaaggaacctctcatttgttccatccaatttccttgattgtt------ttcataccttgtgaattggttattagcccatgatcgtc |
34090780 |
T |
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| Q |
308 |
ctagtaatacttgttctccattctgaaccacaacaccctccattgtttttctagttattttttgcttaactagttgttttcttctaagttgtgatgaatg |
407 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34090781 |
ctggtaatacttgttctccattctgaaccacaacaccctccattgtttttctagttattttttgcttaactagttgttttcttctaagttg-------tg |
34090873 |
T |
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| Q |
408 |
atgatgtaccaaaccaaaatttggttaaataggaatagcaaacataatgcttttcagggtactaagt |
474 |
Q |
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| T |
34090874 |
atgatgt-----accaaaatttggttaaataggaatagcaaacataatgcttttcagggtactaagt |
34090935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 145 - 356
Target Start/End: Original strand, 34093569 - 34093774
Alignment:
| Q |
145 |
tttgattgccaaacaccccctggtgggtttattgcaatttggaaagttaaggatgcagtaactgtggctaccaccattaaggaacctctcatttgttcca |
244 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34093569 |
tttgattgccaaacacctcctggtgggtttattgcaatttggaaagttaaggatgccataactgtggctaccaccattagggaacctctcatttgttcca |
34093668 |
T |
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| Q |
245 |
tccaatttccttgattgttttcatattcataccttgtgaattggttattagcccatgatcgtcctagtaatacttgttctccattctgaaccacaacacc |
344 |
Q |
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||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
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| T |
34093669 |
tcctatttccttgatctttttcgtat------cttgtgaattggttattagcccatgatgatcctggtaatacttgtgttccattctgaaccacaacacc |
34093762 |
T |
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| Q |
345 |
ctccattgtttt |
356 |
Q |
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|||||||||||| |
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| T |
34093763 |
ctccattgtttt |
34093774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 34093460 - 34093553
Alignment:
| Q |
8 |
gagaagcagagaaagatatagtacacaacagtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagc |
101 |
Q |
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||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||| ||| ||| ||||||| | |||||||||||||||||||| |
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| T |
34093460 |
gagaagcagagaaagatatagtacataacagtataaacatttcatatctaagcttttgagtgccatcaccagatgctaaaactgaagtaccagc |
34093553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 34096790 - 34096878
Alignment:
| Q |
37 |
agtaaaaacagttcatatctaatcttctgattgctatcaccaaaggctaaaactgaagtaccagctttgcatgcttgatcaggtgcaca |
125 |
Q |
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|||| ||| ||||||||||||| || || |||||||||||||| ||||||||| |||||| |||||||||| ||||||| ||||||| |
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| T |
34096790 |
agtataaaaagttcatatctaaatttttggttgctatcaccaaatgctaaaactaaagtactagctttgcatatttgatcatgtgcaca |
34096878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 34092660 - 34092710
Alignment:
| Q |
67 |
ttgctatcaccaaaggctaaaactgaagtaccagctttgcatgcttgatca |
117 |
Q |
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|||||||||||||| |||| |||| ||||||||||||||||| ||||||| |
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| T |
34092660 |
ttgctatcaccaaatgctagaactaaagtaccagctttgcatatttgatca |
34092710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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