View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_25 (Length: 491)
Name: NF9220_low_25
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 28853643 - 28853153
Alignment:
| Q |
1 |
cttctgaatctttgtctgtgctcgctccttctcttctggtccatcaagatcgccaatattgtcatgatattcctaaagggggnnnnnnngcaatccatta |
100 |
Q |
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| T |
28853643 |
cttctgaatctttgtctgtgctcgctccttctcttctggtccatcaagatcgccaatattgtcatgatattcctaaagggggaaaaaaagcaatccatta |
28853544 |
T |
|
| Q |
101 |
gagcttctgaatttggggattgggacttcatcgatgcatcttaaatgcaaaaaccaacactaacagagtgacaaaatataaaatatgaatttattcaatc |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28853543 |
gagcttctgaatttgggaattgggacttcatcgatgcatcttaaatgcaaaaaccaacactaacagagtgacaaaatataaaatatgaatttattcaatc |
28853444 |
T |
|
| Q |
201 |
atagccagaggnnnnnnnnnnnnnnncctgaagtatatccttgacatgctgtttactaagtttgttctgctcgagagagaagtagttcaattcttcctct |
300 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28853443 |
atagccagagg--------atatatacctgaagtatatccttgacatgctgtttactaagtttgttctgct----tgagaagtagttcaattcttcctct |
28853356 |
T |
|
| Q |
301 |
catttgcgaatgcctgaccacaaataatttaatttagtcaggcaaggtgaaaacataagtaactaaaag---------------------gatgcaacta |
379 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
28853355 |
catctgcgaatgcctgaccacaaataatttaatttagtcaggcaaggtgaaaacataagtaactaaaagctcttaactttatcataaaaagatgcaacca |
28853256 |
T |
|
| Q |
380 |
cttactcggagcaccaaatgtgacccaaaatgacagcaaccaactgaaaaatcatatataaatttgtcagtatgaaaaaggtgctgtaaaactggcatct |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28853255 |
cttactcggagcaccaaatgtgacccaaaatgacagcaaccaactgaaaaatcatatataaatttgtcagtatgaaaaaggtgctgtaaaactggcatct |
28853156 |
T |
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