View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_33 (Length: 459)
Name: NF9220_low_33
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_33 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 33553705 - 33554145
Alignment:
| Q |
19 |
ctctgaacactttcaagatattagaaaaagtaacaataccaactaagctacaatcatcctcaataacccacaagtagttcactctatgagaaattgcttg |
118 |
Q |
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| T |
33553705 |
ctctgaacactttcaagatattagaaaaagtaacaataccaactaagctacaatcatcctcaataacccacaagtagttcactctatgagaaattgcttg |
33553804 |
T |
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| Q |
119 |
aatcatcacagcaatcaaagagctcttgggatgacaaacaatagcctctacatttctcacaaatcttgccgaatagctcgatgaccttgcgtgatttcct |
218 |
Q |
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| T |
33553805 |
aatcatcacagcaatcaaagagctcttgggatgacaaacaatagcctctacatttctcacaaatcttgccgaatagctcgatgaccttgcgtgctttcct |
33553904 |
T |
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| Q |
219 |
gacctcgtcagactctcctcatcagaggaagacgaggtcgacccctcactcgttaaggaagtcaaaattgtaaactcttgtagtaatttctccaaattct |
318 |
Q |
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| T |
33553905 |
gacctcgtcagaccctcctcatcagaggaagacgaggtcgacacctcactggttaaggaagtcaaaattgtaaacttttgtagcaatttctccaaattct |
33554004 |
T |
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| Q |
319 |
tctccttcaaccttgcctttacaaatctcacaagatcctctggtggggcaccgcagtcaatgtaggccattaagtcccctgcggacaaagctgtgatcgc |
418 |
Q |
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| T |
33554005 |
tctccttcaaccttgcctttacaagtctcacaagatcctctggtggggcaccacagtcaatgtaggccatcaagtcccctgcagacaaagctgtgatcgc |
33554104 |
T |
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| Q |
419 |
ggcagcaaccgtctcatcacaacaagcaagggtgaagggtg |
459 |
Q |
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| T |
33554105 |
gacagcaaccgtctcatcacaacaagcaagggtgaagggtg |
33554145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 459
Target Start/End: Original strand, 33540478 - 33540927
Alignment:
| Q |
22 |
tgaacactttcaagatattagaaaaagtaacaataccaactaagctacaatcatcctcaataacccacaagtagttcactctatgagaaattgcttgaat |
121 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||| || |
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| T |
33540478 |
tgaacaccttcaagatattagaaaaagtaacaatgccaactaagctccaatcatcctcaataacccacaagtaattcactctattagcaattgcttgcat |
33540577 |
T |
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| Q |
122 |
catcacagcaatcaaagagctcttgggatgacaaacaatagcctctacatttctcacaaatcttgccgaatagctcgatgaccttgcgtgatttcctgac |
221 |
Q |
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| T |
33540578 |
catcacagcaatcaaagagctcttgggatgacaaactatagcctctgccttcctcacatatttggccgagtagcttgatgaccttgcatactttcccgac |
33540677 |
T |
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| Q |
222 |
ctcgtca------------gactctcctcatcagaggaagacgaggtcgacccctcactcgttaaggaagtcaaaattgtaaactcttgtagtaatttct |
309 |
Q |
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| T |
33540678 |
cttgtcaaactcctccctggactctcctcatcagaggaagaggaggatgacatatcacctgtcaaggaagtcataagtgtaaactcttgcagcagttttt |
33540777 |
T |
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| Q |
310 |
ccaaattcttctccttcaaccttgcctttacaaatctcacaagatcctctggtggggcaccgcagtcaatgtaggccattaagtcccctgcggacaaagc |
409 |
Q |
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| T |
33540778 |
ccaaattcttctccttcaaccttgcctttacaaccctgactagatcctcaggggggcgaccacagtcaatgtaggccatcaagccccctgcggacaaagt |
33540877 |
T |
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| Q |
410 |
tgtgatcgcggcagcaaccgtctcatcacaacaagcaagggtgaagggtg |
459 |
Q |
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| T |
33540878 |
tgtgatggcggccgcaaccgtctcatcacaacatgcaagtgtgaagggtg |
33540927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 3468135 - 3468198
Alignment:
| Q |
104 |
atgagaaattgcttgaatcatcacagcaatcaaagagctcttgggatgacaaacaatagcctct |
167 |
Q |
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| T |
3468135 |
atgagaaagtgcttgaatcattacagcaaccaaagagctccaagggtaacaaacaatagcctct |
3468198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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