View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9220_low_46 (Length: 363)

Name: NF9220_low_46
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9220_low_46
NF9220_low_46
[»] chr2 (2 HSPs)
chr2 (18-342)||(18028120-18028434)
chr2 (65-122)||(18028034-18028091)
[»] chr8 (2 HSPs)
chr8 (24-121)||(2122975-2123070)
chr8 (59-109)||(44009595-44009645)
[»] chr4 (5 HSPs)
chr4 (19-88)||(6364692-6364761)
chr4 (32-126)||(53141223-53141317)
chr4 (20-109)||(18529910-18529999)
chr4 (68-121)||(53141364-53141417)
chr4 (70-114)||(41271768-41271812)
[»] chr5 (1 HSPs)
chr5 (20-88)||(6074205-6074273)
[»] chr1 (1 HSPs)
chr1 (70-110)||(14372003-14372043)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 18028120 - 18028434
Alignment:
Q  18 actgtgaaaactggtcaaacaaatctgaaccgttatattacttttctacggctgagattaactactgcgtgtaactgcgtgaagcagttacagcaggaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  18028120 actgtgaaaactggtcaaacaaatctgaaccgttatattacttttctacggctgagattaactactg----------cgtgaagcagttacagcaggaaa 18028209  T
Q  118 tccagttccgtgaagtacttaagaacatgaatgtgaatccataaaaatccacccgacatattcatacatactggtagtagtaggcatgctcagccaagta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18028210 tccagttccgtgaagtacttaagaacatgaatgtgaatccataaaaatccacccgacatattcatacatactggtagtagtaggcatgctcagccaagta 18028309  T
Q  218 aaagaaaagaacatcaacataacacttcaatatctatacgccagttactctcctggcacaactaaatatctgtaatgccttcacatgataaataagattg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  18028310 aaagaaaagaacatcaacataacacttcaatatctatacgccagttactctcctggcacaactaaatatctgtaatgccttcgcatgataaataagatta 18028409  T
Q  318 aaaaaatgataacagaagaagcacc 342  Q
    |||||||||||||||||||||||||    
T  18028410 aaaaaatgataacagaagaagcacc 18028434  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 18028091 - 18028034
Alignment:
Q  65 acggctgagattaactactgcgtgtaactgcgtgaagcagttacagcaggaaatccag 122  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18028091 acggctgagattaactactgcatgtaactgcgtgaagcagttacagcaggaaatccag 18028034  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 2123070 - 2122975
Alignment:
Q  24 aaaactggtcaaacaaatctgaaccgttatattacttttctacggctgagattaactactgcgtgtaactgcgtgaagcagttacagcaggaaatcca 121  Q
    ||||||||||||| |||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  2123070 aaaactggtcaaataaatctgaactgttata--acttttctacggctgagattaacttctgcgtgtaactgcgtgaagcagttacaacaagaaatcca 2122975  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 44009595 - 44009645
Alignment:
Q  59 ttttctacggctgagattaactactgcgtgtaactgcgtgaagcagttaca 109  Q
    ||||||| | ||| ||| |||||||||||||||||||||||||||||||||    
T  44009595 ttttctatgactgcgatcaactactgcgtgtaactgcgtgaagcagttaca 44009645  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 6364692 - 6364761
Alignment:
Q  19 ctgtgaaaactggtcaaacaaatctgaaccgttatattacttttctacggctgagattaactactgcgtg 88  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  6364692 ctgtgaaaattggtcaaacaaatctgaaccgttatattacttttctacgactgagattaactactacgtg 6364761  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 53141317 - 53141223
Alignment:
Q  32 tcaaacaaatctgaaccgttatattacttttctacggctgagattaactactgcgtgtaactgcgtgaagcagttacagcaggaaatccagttcc 126  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||||||||| ||||| ||||||||||||||||| ||  |||| |||||||    
T  53141317 tcaaacaaatctgaactgttatattacatttatacggttgagattaactactgcatgtaattgcgtgaagcagttacaacaaaaaattcagttcc 53141223  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 18529910 - 18529999
Alignment:
Q  20 tgtgaaaactggtcaaacaaatctgaaccgttatattacttttctacggctgagattaactactgcgtgtaactgcgtgaagcagttaca 109  Q
    ||||| |||||| ||||||||||| |||| |   || | ||||||| ||||||||| || |||| |||||||||||||||||||||||||    
T  18529910 tgtgataactggccaaacaaatctaaaccatcgaatcatttttctatggctgagatcaattactccgtgtaactgcgtgaagcagttaca 18529999  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 53141364 - 53141417
Alignment:
Q  68 gctgagattaactactgcgtgtaactgcgtgaagcagttacagcaggaaatcca 121  Q
    |||||||||||||||| |||||||||||||||||| |||| ||| | |||||||    
T  53141364 gctgagattaactactacgtgtaactgcgtgaagcggttaaagccgaaaatcca 53141417  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 41271812 - 41271768
Alignment:
Q  70 tgagattaactactgcgtgtaactgcgtgaagcagttacagcagg 114  Q
    ||||||| || |||||||| ||||| |||||||||||||||||||    
T  41271812 tgagattgaccactgcgtgaaactgtgtgaagcagttacagcagg 41271768  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 6074273 - 6074205
Alignment:
Q  20 tgtgaaaactggtcaaacaaatctgaaccgttatattacttttctacggctgagattaactactgcgtg 88  Q
    ||||||||||| ||||| |||||| |||| || ||| ||| || |||| ||||||||||||||||||||    
T  6074273 tgtgaaaactgatcaaataaatcttaaccattgtatcactattttacgactgagattaactactgcgtg 6074205  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 14372043 - 14372003
Alignment:
Q  70 tgagattaactactgcgtgtaactgcgtgaagcagttacag 110  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  14372043 tgagattaactactgcgtataactgcgtgaagcaattacag 14372003  T

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