View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_50 (Length: 339)
Name: NF9220_low_50
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 49123797 - 49124135
Alignment:
| Q |
1 |
cattaccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgttcttcttttgggacccatcaattatggacagaccaaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49123797 |
cattaccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgttcttcttttgggacccatcaattatggacagaccaaaatc |
49123896 |
T |
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| Q |
101 |
agagagctgaatccaccgccaataagtacgtgggtgggtgtcaattgataagaaactttggtgaataaaatactttgtggaagaagataaaatatatagt |
200 |
Q |
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| T |
49123897 |
agagagctgaatccaccgccaattagtacgtgggtgggtgtcaattgataagaaactttggtgaataaaatactttgtggaagaagataaaatatatagt |
49123996 |
T |
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| Q |
201 |
aaattcagttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49123997 |
aaattcagttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtag |
49124096 |
T |
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| Q |
301 |
atattctaatcctctggtcatcaaagaagaatgtaaata |
339 |
Q |
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| T |
49124097 |
atattctaatcctctggtcatcaaagaagaatgtaaata |
49124135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 4271528 - 4271421
Alignment:
| Q |
209 |
ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta |
308 |
Q |
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| T |
4271528 |
ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta |
4271429 |
T |
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| Q |
309 |
atcctctg |
316 |
Q |
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| T |
4271428 |
aacctctg |
4271421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 4271743 - 4271627
Alignment:
| Q |
4 |
taccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatg---ttcttcttttgggacccatcaattatggacagaccaaaatc |
100 |
Q |
| |
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|||||||||||||||| |||||||| || || |||||||| ||||||| ||||||| ||||| || |||||||||||| |||| | ||||||||||| |
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| T |
4271743 |
taccatctaaaagatactctggggcaacataccccaatgtgcctgaaagcttgatgttattcttgttctgggacccatcagttattgcaagaccaaaatc |
4271644 |
T |
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| Q |
101 |
agagagctgaatccacc |
117 |
Q |
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||| |||||||| |||| |
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| T |
4271643 |
agaaagctgaattcacc |
4271627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 2807872 - 2807765
Alignment:
| Q |
209 |
ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||||| || |||||||| ||||||| || |
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| T |
2807872 |
ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta |
2807773 |
T |
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| Q |
309 |
atcctctg |
316 |
Q |
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| T |
2807772 |
aacctctg |
2807765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 2808087 - 2807971
Alignment:
| Q |
4 |
taccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatg---ttcttcttttgggacccatcaattatggacagaccaaaatc |
100 |
Q |
| |
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|||||||||||||||| || ||||| || || |||||||| ||||||| ||||||| ||||| ||||||||||||||| |||| | ||||||||||| |
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| T |
2808087 |
taccatctaaaagatactccggggcaacataccccaatgtgcctgaaagcttgatgttattcttgttttgggacccatcagttattgcaagaccaaaatc |
2807988 |
T |
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| Q |
101 |
agagagctgaatccacc |
117 |
Q |
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||| |||||||| |||| |
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| T |
2807987 |
agaaagctgaattcacc |
2807971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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