View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9220_low_51 (Length: 336)
Name: NF9220_low_51
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 37139995 - 37140291
Alignment:
| Q |
16 |
aatactagcgatgatgaagaaaatgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacacca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37139995 |
aatactagcgatgatgaagaaaatgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacacca |
37140094 |
T |
|
| Q |
116 |
ctctcaatcctgtaataataacactctcttaacaacatttcatttgtttcactttctctttcttattttatgctatagatatttgaacaaatagaatgg- |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37140095 |
ctctcaatcctgtaataataacactctcttaacaacatttcatttgtttcactttctctttcttattttatgctatagatatttgaacaaatagaatgga |
37140194 |
T |
|
| Q |
215 |
aaaaaatagtgatcattttattagttaaagatttttatcatgcaatacatggggggaaccttcaatttcatccgtttttctcaaattttaggggaagaac |
314 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37140195 |
aaaaaatagtgatcattttattagat-----tttttatcatgcaatacatggggggaaccttcaatttcatccggttttctcaaattttaggggaagaac |
37140289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 23335934 - 23336039
Alignment:
| Q |
25 |
gatgatgaagaaaatgggtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatc |
124 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||||||||| || ||||| |||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
23335934 |
gatgatgatgaaaatgggtcaactaggaagaaactaagactctctaaagatcaatctgcttttcttgaagaaagtttcaaagaacacaccactcttaatc |
23336033 |
T |
|
| Q |
125 |
ctgtaa |
130 |
Q |
| |
|
|||||| |
|
|
| T |
23336034 |
ctgtaa |
23336039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 25902322 - 25902258
Alignment:
| Q |
46 |
acaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaaca |
110 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| |||||||||||||| || ||||||||||| |
|
|
| T |
25902322 |
acaaggaagaaacttaggctctctaaggatcaatctgcttttcttgaagaaagtttcaaagaaca |
25902258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 40299685 - 40299733
Alignment:
| Q |
88 |
cttgaagatagcttcaaagaacacaccactctcaatcctgtaataataa |
136 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
40299685 |
cttgaagaaagcttcaaagaacacagcactctcaatcctgtaatcataa |
40299733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 41452460 - 41452397
Alignment:
| Q |
49 |
aggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacaca |
112 |
Q |
| |
|
||||| ||||| ||||||||||| || ||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
41452460 |
aggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacaca |
41452397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University