View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_53 (Length: 323)
Name: NF9220_low_53
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 127 - 306
Target Start/End: Original strand, 46036092 - 46036271
Alignment:
| Q |
127 |
aatacataatacaattgagacaacaattttatgctggaattctggaagaaaagaaaaatccctatcataaattaaaccaaataggctcttatcagtgagt |
226 |
Q |
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| T |
46036092 |
aatacataatacaattgagacaacaattttatgctggaattctgaaagaaaagaaaaatccctatcataaattaaaccaaataggctcttatcaatgagt |
46036191 |
T |
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| Q |
227 |
atttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatgtcagtcctt |
306 |
Q |
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| T |
46036192 |
atttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatgtcagtcctt |
46036271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 46034999 - 46035118
Alignment:
| Q |
16 |
aaaatagacccatcaaatttaattttatttcttatgattatcatcattttgcaaatagaaacagaggttaatatgtacaccaccaattctggcattggct |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46034999 |
aaaatagacccatcaaattttattttatttcttatgattatcatcattttgcaaatagaaacagaggttaatatgtacaacaccaattctggcattggct |
46035098 |
T |
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| Q |
116 |
agctagctacaaatacataa |
135 |
Q |
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| T |
46035099 |
agctagctacaaatacataa |
46035118 |
T |
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