View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9220_low_55 (Length: 322)
Name: NF9220_low_55
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 1487354 - 1487047
Alignment:
| Q |
1 |
tacaagctgtaagagaaacagattaacaaggaaggcgaggaaacttgaaaaatcattttcttttgtagtgattgcatgcttaagtacttaaagggaaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1487354 |
tacaagctgtaagagaaacagattaacaaggaaggtgaggaaacttgaaaactcattttcttttgtagtgattgcatgcttaagtacttaaagggaaacc |
1487255 |
T |
|
| Q |
101 |
ataactgaaagaaaagactctctcagtgacgacttatcaccacttataaaaccaccacgcttaggaccggatatttagagcgtgaagattgtatgactaa |
200 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1487254 |
ataactgaaagaaaagactatc--agtgacgacttatcaccacttataaaaccaccacgcttaggaccagatatttagagcgtgaagattgtatgactaa |
1487157 |
T |
|
| Q |
201 |
atattgttagaacaatagctcaggttcaaaagatattagatacgaaaagttcaaacaaagaacgtacaatatttgatcacggagtttggccaattataca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1487156 |
atattgttagaacaatagctcaggttcaaaagatattagatacgaaaagttcaaacaaagaacgtacaatatttgatcacggagtttggccaattataca |
1487057 |
T |
|
| Q |
301 |
tacatctctg |
310 |
Q |
| |
|
| |||||||| |
|
|
| T |
1487056 |
tgcatctctg |
1487047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University