View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9220_low_56 (Length: 318)

Name: NF9220_low_56
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9220_low_56
NF9220_low_56
[»] chr8 (3 HSPs)
chr8 (1-302)||(9935845-9936147)
chr8 (125-195)||(8273410-8273480)
chr8 (107-186)||(37270294-37270373)
[»] chr7 (1 HSPs)
chr7 (1-303)||(42460433-42460737)
[»] chr4 (2 HSPs)
chr4 (1-302)||(2281690-2281993)
chr4 (17-74)||(50436655-50436713)
[»] chr2 (2 HSPs)
chr2 (35-197)||(1479887-1480049)
chr2 (125-169)||(40920770-40920814)
[»] chr6 (2 HSPs)
chr6 (105-192)||(1033851-1033938)
chr6 (125-186)||(2921387-2921448)
[»] chr5 (1 HSPs)
chr5 (107-206)||(36988583-36988682)
[»] chr1 (1 HSPs)
chr1 (108-197)||(4641205-4641294)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 9935845 - 9936147
Alignment:
Q  1 taagtgggtgtggactccggaggaggacggttctttttcggtcaaatcaacttatttcattttggaaaatctcttccttgtggtagacgatgtgagtgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9935845 taagtgggtgtggactccggaggaggacggttctttttcggtcaaaccaacttattccattttggaaaatctcttccttgtggtagacgatgtgagtgct 9935944  T
Q  101 atttatgagggggttttctccttgatttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcgtattcctacgaagg 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||    
T  9935945 atttatgagggggttttctcctcgatttggaagagtccggctccttccaaagtagtcacattctattggtccctacttcttgatcgtattcctacgaagg 9936044  T
Q  201 ataatcgtgcatctcgacatatcttggatctgg--gtgtccttactttttgttttatgtggaaggtgtgttgagacttctacccatctcttcttgcattg 298  Q
    |||||| |||||||||||||| |||||||  ||  ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9936045 ataatcttgcatctcgacataccttggattcgggtgtgtccttactttgtg-tttgtgtggaaggtgtgttgagacttctacccatctcttcttgcattg 9936143  T
Q  299 tgat 302  Q
    ||||    
T  9936144 tgat 9936147  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 8273410 - 8273480
Alignment:
Q  125 atttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcgtattcctac 195  Q
    ||||||||||| |||||||| |||||||| || ||||||| ||||||  |||| |||||||||||||||||    
T  8273410 atttggaagagcccggctccgtccaaagtggtggcattcttttggtctttactccttgatcgtattcctac 8273480  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 37270373 - 37270294
Alignment:
Q  107 gagggggttttctccttgatttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcg 186  Q
    ||||| |||||||| ||  |||||| |||||||||||| |||||||| || |||||||| ||| |  |||||||||||||    
T  37270373 gagggagttttctcattactttggaggagtccggctccatccaaagtggtggcattctcatggactttacttcttgatcg 37270294  T

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Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 42460737 - 42460433
Alignment:
Q  1 taagtgggtgtggactccggaggaggacggttctttttcggtcaaatcaacttatttcattttggaaaatctcttccttgtggtagacgatgtgagtgct 100  Q
    |||||||||||||| |||||||||  | ||    |||||||||||||||||||||  ||||||||||||||  || |||||  ||||||| |||||||||    
T  42460737 taagtgggtgtggaatccggaggataatggcgtgttttcggtcaaatcaacttatcccattttggaaaatcaatttcttgtaatagacgaggtgagtgct 42460638  T
Q  101 atttatgagggggttttctccttgatttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcgtattcctacgaagg 200  Q
    || ||||||||||| ||||||| |||||||||||||||||||||||||||||||||  | ||||||||| |  |||| |||||| | |||||||||||||    
T  42460637 atgtatgagggggtgttctcctcgatttggaagagtccggctccttccaaagtagtgacgttctcttgggcactactccttgattgcattcctacgaagg 42460538  T
Q  201 ataatcgtgcatctcgacatatcttggatctgggt--gtccttactttttgttttatgtggaaggtgtgttgagacttctacccatctcttcttgcattg 298  Q
    ||||||  |||| ||| || || ||||||  | ||  ||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| ||||||||    
T  42460537 ataatctcgcatttcgtcacattttggattcgagtgcgtccttactttgtgttttgtgtggaatgtgtgttgagacttctacccacctctttttgcattg 42460438  T
Q  299 tgatt 303  Q
    |||||    
T  42460437 tgatt 42460433  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 2281690 - 2281993
Alignment:
Q  1 taagtgggtgtggactccggaggaggacggttctttttcggtcaaatcaacttatttcattttggaaaatctcttccttgtggtagacgatgtgagtgct 100  Q
    ||||||||| |||| |||||||||||| ||    |||||||||||||| ||||||||||||||||||||| | |||||| ||| | | |||||| ||||     
T  2281690 taagtgggtttggattccggaggaggaaggcatattttcggtcaaatctacttatttcattttggaaaatattttccttctggaaaatgatgtgggtgcg 2281789  T
Q  101 atttatgagggggttttctccttgatttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcgtattcctacgaagg 200  Q
    |   |||||||||||||||||||| |||||||||||||| |||| ||||||||||| |  |||||||||||  | || ||||  |||||||| || | ||    
T  2281790 accaatgagggggttttctccttgctttggaagagtccgactccatccaaagtagtggtgttctcttggtctcttctccttgggcgtattccaacaaggg 2281889  T
Q  201 ataatcgtgcatctcgacatatcttggatctgggtg--tccttactttttgttttatgtggaaggtgtgttgagacttctacccatctcttcttgcattg 298  Q
    |||||| |||||  || |||||  | |||||||| |  ||||| |||| || ||| ||||||||| |||  |||||  |||| || ||||| || |||||    
T  2281890 ataatcttgcattccgtcatatactcgatctgggagcttccttgctttgtgctttgtgtggaaggagtgccgagacgcctactcacctctttttacattg 2281989  T
Q  299 tgat 302  Q
    ||||    
T  2281990 tgat 2281993  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 50436655 - 50436713
Alignment:
Q  17 ccggaggaggacggttc-tttttcggtcaaatcaacttatttcattttggaaaatctct 74  Q
    ||||||||||| ||||  |||||||||||||||||| |||| |||||||||||||||||    
T  50436655 ccggaggaggatggtttatttttcggtcaaatcaacctattccattttggaaaatctct 50436713  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 1480049 - 1479887
Alignment:
Q  35 ttttcggtcaaatcaacttatttcattttggaaaatctcttccttgtggtagacgatgtgagtgctatttatgagggggttttctccttgatttggaaga 134  Q
    ||||||||||||||  |||||| ||| ||||||||| ||||||| || | ||| |||||| | | |||| |||||||  |||| || ||| |||||||||    
T  1480049 ttttcggtcaaatctgcttattccatgttggaaaatatcttcctcgtcgaagaagatgtgggagatattaatgagggttttttttctttgctttggaaga 1479950  T
Q  135 gtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcgtattcctacga 197  Q
    || ||||||||||||||||||| || ||||||||||   || | |||||||| ||||||||||    
T  1479949 gttcggctccttccaaagtagtggccttctcttggttgttattacttgatcgcattcctacga 1479887  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 40920770 - 40920814
Alignment:
Q  125 atttggaagagtccggctccttccaaagtagtcgcattctcttgg 169  Q
    ||||||| ||||||||||||||| ||||| || ||||||||||||    
T  40920770 atttggaggagtccggctccttcaaaagttgtggcattctcttgg 40920814  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 1033851 - 1033938
Alignment:
Q  105 atgagggggttttctccttgatttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcgtattcc 192  Q
    ||||||||||||| |||    |||||||||||||||||||||||||||| || || |||||||||||| | || ||||||||||||||    
T  1033851 atgagggggttttttccgcactttggaagagtccggctccttccaaagttgtggcgttctcttggtccttgctccttgatcgtattcc 1033938  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 2921448 - 2921387
Alignment:
Q  125 atttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcg 186  Q
    |||||||||||||||||||| || |||||||| || |||||||||||  |||||||||||||    
T  2921448 atttggaagagtccggctccgtctaaagtagtggccttctcttggtctttacttcttgatcg 2921387  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 36988583 - 36988682
Alignment:
Q  107 gagggggttttctccttgatttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcgtattcctacgaaggataatc 206  Q
    |||||| ||||||| || |||||||||||||||||||| || ||||| || || ||||| |||||| |||| |||||||| || ||||| || |||||||    
T  36988583 gaggggattttctctttaatttggaagagtccggctccatcgaaagtggtggcgttctcgtggtccttactccttgatcgaatccctacaaaagataatc 36988682  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 4641294 - 4641205
Alignment:
Q  108 agggggttttctccttgatttggaagagtccggctccttccaaagtagtcgcattctcttggtccatacttcttgatcgtattcctacga 197  Q
    ||||| |||| || || |||||||||||||||| ||| || || ||||| || ||||| | |||| |||| |||||||||||||| ||||    
T  4641294 aggggtttttttctttaatttggaagagtccgggtccatcaaaggtagtggcgttctcattgtccttactccttgatcgtattccgacga 4641205  T

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