View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_58 (Length: 288)
Name: NF9220_low_58
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_58 |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 26 - 271
Target Start/End: Complemental strand, 2244929 - 2244688
Alignment:
| Q |
26 |
agcagagaaaaatgtggcaagtgctacactgatatgttgactcatggcaatagacctaagtgtccataaatacatatatatatgttgttaatcaattatt |
125 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2244929 |
agcaaagaaaaatgtggcaagtgctacactgatatgttgactcatggcaatagacctaagtgtccataaatacatatat----gttgttaatcaattatt |
2244834 |
T |
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| Q |
126 |
acaagttcaacaaagtttgggttgtctatgtaatatgatccttgtggtccaaaaattttgaatttatatattgaaattaaatggtattatcatggaagta |
225 |
Q |
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| T |
2244833 |
acaagttcaacaaagtttgggttgtctatgtaatatgatccttgtggtccaaaatttttgaatttatatactgaaattaaatggtattatcatggaagta |
2244734 |
T |
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| Q |
226 |
tattttgctatggaaaattcaggagtgcaattaatatgatatgaac |
271 |
Q |
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| T |
2244733 |
tattttgctatggaaaattcaggagtgcaattaatatgatatgaac |
2244688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 105 - 267
Target Start/End: Original strand, 2125958 - 2126118
Alignment:
| Q |
105 |
atatgttgttaatcaattattacaagttcaacaaagtttgggttgtctatgtaatatgatccttgtggtccaaaaattttgaatttatatattgaaatta |
204 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
2125958 |
atatgttgttaatcaattattacaagttcaacactttttgtgttgtctatgtaatatgatccttgtggtccaagaattttgaatt--tatattgaaatta |
2126055 |
T |
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| Q |
205 |
aatggtattatcatggaagtatattttgctatggaaaattcaggagtgcaattaatatgatat |
267 |
Q |
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| T |
2126056 |
aatggtattgttatggaagcatattttgctagtggaaatttaggagtacaattattatgatat |
2126118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 2125823 - 2125900
Alignment:
| Q |
29 |
agagaaaaatgtggcaagtgctacactgatatgttgactcatggcaatagacctaagtgtccataaatacatatatat |
106 |
Q |
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| T |
2125823 |
agagaaaaatgtggcaagtgttacactgatatggtgactcatggcaatagacctaagtgtccatagatacatacatat |
2125900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 2147034 - 2147067
Alignment:
| Q |
28 |
cagagaaaaatgtggcaagtgctacactgatatg |
61 |
Q |
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| T |
2147034 |
cagagaaaaatgtggcaagtgctacactgatatg |
2147067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 23498 - 23531
Alignment:
| Q |
28 |
cagagaaaaatgtggcaagtgctacactgatatg |
61 |
Q |
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| T |
23498 |
cagagaaaaatgtggcaagtgctacactgatatg |
23531 |
T |
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