View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_64 (Length: 262)
Name: NF9220_low_64
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 28853621 - 28853817
Alignment:
| Q |
12 |
gagcagagacaaagattcagaagttcttaatggcgttataactattctaaggcttaatagtgtaaacttcattggaagtgattagtattaatttttcttc |
111 |
Q |
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| T |
28853621 |
gagcacagacaaagattcagaagttcttaatggcgttataactattgtaaggcttaatagtggaaacttcattggaagtgattagtatt----tttcttc |
28853716 |
T |
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| Q |
112 |
attttgcccctctttcctagtgcatgtaaaatctgttttgtcgggagaatgagaggataattgagaaagaaacactgatatgtggttgttgagatcatag |
211 |
Q |
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| T |
28853717 |
attttgcccctctttcctagtgcatgtaaaatctgttttgtcgggagaatgagaggataattgagaaagaaacactgatatgtggttgttgagatcatag |
28853816 |
T |
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