View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9220_low_9 (Length: 819)
Name: NF9220_low_9
Description: NF9220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9220_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 787; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 1 - 807
Target Start/End: Original strand, 30897875 - 30898681
Alignment:
| Q |
1 |
gtggagaagtttacacatggggatggaaggaatgtattccttctgggaaggtattcggtgaaacttcgcaaggggtaagtcctgaaaaagatgcacaagg |
100 |
Q |
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| T |
30897875 |
gtggagaagtttacacatggggatggaaggaatgtattccttctgggaaggtattcggtgaaacttcgcaaggggtaagtcctgaaaaagatgcacaagg |
30897974 |
T |
|
| Q |
101 |
aaagcagagttcattcttgacagaacaaggtatgtctaacctcttttcaatggacatttgtctacagatacctgcccctcccaggaggtggtctaagctt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897975 |
aaagccgagttcattcttgacagaacaaggtatgtctaacctcttttcaatggacatttgtctacagatacctgcccctcccaggaggtggtctaagctt |
30898074 |
T |
|
| Q |
201 |
agccaaggtctacgaaaaggattctggagaagggaactgatttaagatacaaagttcgaaaccccaaaaagaaagaagaaaagagttttgcactttatga |
300 |
Q |
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| T |
30898075 |
agccaaggtctacgaaaaggattctggagaagggaactgatttaagatacaaagttcgaaaccccaaaaagaaagaagaaaagagttttgcactttatga |
30898174 |
T |
|
| Q |
301 |
tgagcaaagaaggatacttatgctttatctaacaaactgatgtagagtgattttgcaacagtgagctctcgttctcaagtctcaaaatccacaggaggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30898175 |
tgagcaaagaaggatacttatgctttatctaacaaactgatgtagagtgattttgcaacagtgagctctcgttctcaagtctcaaaatccacaggaggaa |
30898274 |
T |
|
| Q |
401 |
ctgtttcaagtggagaagaaagtagtaagagaaggaaagtatcttcagcaaagcaagcggctcaaacctcgtcatctggtgatgatattctaacagcaat |
500 |
Q |
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| T |
30898275 |
ctgtttcaagtggagaagaaagtagtaagagaaggaaagtatcttcggcaaagcaagcggctcaaacctcgtcatctggtgatgatattctaacagcaat |
30898374 |
T |
|
| Q |
501 |
gccatgtcttgtcacactgaatccaggggtaaagataacaagtgttgctgccggtgggcgtcataccctagtattgtcaggtattgactttatatggact |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30898375 |
gccatgtcttgtcacactgaatccaggggtaaagataacaagtgttgctgctggtgggcgtcataccctagtattgtcaggtattgaatttatatggact |
30898474 |
T |
|
| Q |
601 |
atttattctcccgagcttaaaatttcatgtaatgtgaccatcttttgattgaagcatcacttttgtgctatggaagatcagacatgcagtcttagacatg |
700 |
Q |
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| T |
30898475 |
atttattctcccgagcttaaaatttcatgtaatgtgaccatcttttgattgaagcatcacttttgtgctatggaagatcagacatgcagtcttagacatg |
30898574 |
T |
|
| Q |
701 |
tcattaattgtagctttctgaatttttcagatataggacaggtgtggggttggggctatggaggtgaagggcagcttggtttgggctccagagtacgtat |
800 |
Q |
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| T |
30898575 |
tcattaattgtagctttctgaatttttcagatataggacaggtgtggggttggggctatggaggtgaagggcagcttggtttgggctccagagtacgtat |
30898674 |
T |
|
| Q |
801 |
gatgtcc |
807 |
Q |
| |
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| ||||| |
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| T |
30898675 |
ggtgtcc |
30898681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 724 - 785
Target Start/End: Original strand, 23117638 - 23117699
Alignment:
| Q |
724 |
ttttcagatataggacaggtgtggggttggggctatggaggtgaagggcagcttggtttggg |
785 |
Q |
| |
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||||||||| | |||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
23117638 |
ttttcagatgtgggacaggtctggggttggggctatggaggcgaaggacagctaggtttggg |
23117699 |
T |
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