View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9221_high_2 (Length: 442)
Name: NF9221_high_2
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9221_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 34344506 - 34344098
Alignment:
| Q |
16 |
tgtgcttcatggttgttgggtatgactcatgtgtggaagaggggcaagaggcggagaaggagataagctagtggaacgttaagaaataaaccgaactata |
115 |
Q |
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| T |
34344506 |
tgtgcttcatggttgttgggtatgactcatgtgtggaagaggggcaagaggcggagaaggagctaagctagtggaacgttaagaaataaaccgaactata |
34344407 |
T |
|
| Q |
116 |
accattctaaagttgccgaggagaattattgtaaactgaaccgaagtattgtatatattggttgtaacgctgtaaaccctaattcatcacagaaataaat |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344406 |
accattctaaagttgccgaggagcattattgtaaactgaaccgaagtattgtatatattggttgtaacgctgtaaaccctaattcatcacagaaataaat |
34344307 |
T |
|
| Q |
216 |
gtaactatcgatgctctatagtcacagaggttaggtccattggctgaattgcgtgaacaaaagtcgtgtttcattatcttccaattttcgttttctctta |
315 |
Q |
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|||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344306 |
gtaactatcggtgctctatagtcacagagg-taggtcaattggctgaattgagtgaacaaaagtcgtgtttcattatcttccaattttcgttttctctta |
34344208 |
T |
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| Q |
316 |
tacttctataccggttgttgttctaacaatgctgtaaccacaactaaaattttaaaccatgtttgtaactctattgtcagtaatcagtaatcaaactata |
415 |
Q |
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| T |
34344207 |
tacttctataccggttgttgttctaacaatgctgtaaccacaactaaaattttaaaccatgtttgtaactcgattgtcagtaatcagtaatcaaactata |
34344108 |
T |
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| Q |
416 |
ggctaagact |
425 |
Q |
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| T |
34344107 |
ggctaagact |
34344098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 344
Target Start/End: Original strand, 23849784 - 23849960
Alignment:
| Q |
167 |
tatatattggttgtaacgctgtaaaccctaattcatcacagaaataaatgtaactatcgatgctctatagtcacagaggttaggt-ccattggctgaatt |
265 |
Q |
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| T |
23849784 |
tatatcttggttgtaacaatgtaaaccctgattcataacagaaataaacaaaactatgactgctttatagtcgta-agggtaggcaccattggccgaact |
23849882 |
T |
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| Q |
266 |
gcgtgaacaaaagtcgtgtttcattatcttccaattttcgttttctcttatacttctataccggttgttgttctaacaa |
344 |
Q |
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| T |
23849883 |
gcgtgaacaaagatcatgtctcattgtctttcgattttcgttc-cttttatatttctataccggttgttgttctaacaa |
23849960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 673843 - 673917
Alignment:
| Q |
140 |
attattgtaaactgaaccgaagtattgtatatattggttgtaacgctgtaaaccctaattcatcacagaaataaa |
214 |
Q |
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| T |
673843 |
attattgtaaactgaatcgtaatactatatatattggttataacactgtaaattctaattcatcacagaaataaa |
673917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 6938514 - 6938578
Alignment:
| Q |
281 |
gtgtttcattatcttccaattttcgttttctcttatacttctataccggttgttgttctaacaat |
345 |
Q |
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| T |
6938514 |
gtgtctcattgtctttcaatttttgttttttcttatacttgtatatcggttgttgttctaacaat |
6938578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 6938389 - 6938467
Alignment:
| Q |
145 |
tgtaaactgaaccgaagtattgtatatattggttgtaacgctgtaaaccctaattcatcacagaaataaatgtaactat |
223 |
Q |
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| T |
6938389 |
tgtaaactgaaccaaagtactatatatatttgttataacattgtaaaccctaatttatgacaaaaataaatggaactat |
6938467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35931832 - 35931872
Alignment:
| Q |
143 |
attgtaaactgaaccgaagtattgtatatattggttgtaac |
183 |
Q |
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| T |
35931832 |
attgtaaactgaaccgtagtattatatatattggttgtaac |
35931872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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