View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9221_low_1 (Length: 954)
Name: NF9221_low_1
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9221_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 8e-70; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 669 - 811
Target Start/End: Original strand, 21126510 - 21126652
Alignment:
| Q |
669 |
cttgggcagggaattcaaattgggttcatgcaatggggtggtcaggtcaaaaacagttcgcggcatcgaaaacagttcaatttgttgttgatggtaaaca |
768 |
Q |
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| T |
21126510 |
cttgggcaggaaattcaaaatgggttcatgcaatggggtggtcaggtcaaaaacagttcgcggcatcgaaaacagttcaatttgttgttgatggtaaaca |
21126609 |
T |
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| Q |
769 |
agcaggattgttgaatagttatggacctctctcttttctaaag |
811 |
Q |
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| T |
21126610 |
agcaggattgttgaatagttatggacctctctcttttctaaag |
21126652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 669 - 811
Target Start/End: Original strand, 21146600 - 21146742
Alignment:
| Q |
669 |
cttgggcagggaattcaaattgggttcatgcaatggggtggtcaggtcaaaaacagttcgcggcatcgaaaacagttcaatttgttgttgatggtaaaca |
768 |
Q |
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| T |
21146600 |
cttgggcaggaaattcaaaatgggttcatgcaatggggtggtcaggtcaaaaacagttcgcggcatcgaaaacagttcaatttgttgttgatggtacaca |
21146699 |
T |
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| Q |
769 |
agcaggattgttgaatagttatggacctctctcttttctaaag |
811 |
Q |
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| T |
21146700 |
agcaggattgttgaatagttatggacctctctcttttctaaag |
21146742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 21126114 - 21126368
Alignment:
| Q |
17 |
agaaagaaatgtgaaggaccattgtgttatgacttctcgaatgtggagagacttatgaaccagaagacagttaaggatgctttaggtgttggggatatac |
116 |
Q |
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| T |
21126114 |
agaaagaaatgtcaaggaccactgtgttatgacttctcaaatttagagaaacttctaaacaaaaagacagttagggatgctttaggtgttggggacatag |
21126213 |
T |
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| Q |
117 |
agtttgtttcatgcagtctagatgtgcataatgctatggcaaaagattttatgcaaaactttgaagtggatattcctgcacttcttgaagatggaatcaa |
216 |
Q |
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| T |
21126214 |
actttgtgtcatgcagcagagtggtgtataatgcaatgttgcaagattggatgagaaactttgaagtggatattcctgaacttcttgaggatggaattaa |
21126313 |
T |
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| Q |
217 |
agttcttatatatgctggggaatttgatcttatttgcaattggctaggtgagtga |
271 |
Q |
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| T |
21126314 |
ggttcttatatatgctggggaatttgactttatttgcaattggcttggtaagtga |
21126368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 21146204 - 21146458
Alignment:
| Q |
17 |
agaaagaaatgtgaaggaccattgtgttatgacttctcgaatgtggagagacttatgaaccagaagacagttaaggatgctttaggtgttggggatatac |
116 |
Q |
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| T |
21146204 |
agaaagaaatgtcaaggaccactgtgttatgacttctcaaatttagagaaacttctaaacaaaaagacagttagggatgctttaggtgttggggacatag |
21146303 |
T |
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| Q |
117 |
agtttgtttcatgcagtctagatgtgcataatgctatggcaaaagattttatgcaaaactttgaagtggatattcctgcacttcttgaagatggaatcaa |
216 |
Q |
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| T |
21146304 |
actttgtgtcatgcagcagagtggtgtataatgcaatgttgcaagattggatgagaaactttgaagtggatattcctgaacttcttgaggatggaattaa |
21146403 |
T |
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| Q |
217 |
agttcttatatatgctggggaatttgatcttatttgcaattggctaggtgagtga |
271 |
Q |
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| T |
21146404 |
ggttcttatatatgctggggaatttgactttatttgcaattggcttggtaagtga |
21146458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 864 - 943
Target Start/End: Original strand, 21126705 - 21126784
Alignment:
| Q |
864 |
tgataactaactataaatatttttcttgagtgtgacattgttgattcaatttttggttaattttatttatgtgatgtcca |
943 |
Q |
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| T |
21126705 |
tgataactaactataaatatttttcttgagtgtgacattgttgattcaatttttggttaattttatttatgtgatgtcca |
21126784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 21150952 - 21151180
Alignment:
| Q |
41 |
tgttatgacttctcgaatgtggagagacttatgaaccagaagacagttaaggatgctttaggtgttggggatatacagtttgtttcatgcagtctagat- |
139 |
Q |
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| T |
21150952 |
tgttatgacttttcaaatgtgatgaaacttttgaatgaaaagacagttaaggatgctttaggtgttggggacatagagtttgtttcatgcag-caaaata |
21151050 |
T |
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| Q |
140 |
gtgcataatgctatggcaaaagattttatgcaaaactttgaagtggatattcctgcacttcttgaagatggaatcaaagttcttatatatgctggggaat |
239 |
Q |
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||| || ||||| | |||||| ||| | ||| |||||| ||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||| |
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| T |
21151051 |
gtgtatgatgctttacagcaagattggatgaagaaccatgaagtagatattccttcacttcttgaagaaggaatcaaggttcttatatatgttggagaat |
21151150 |
T |
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| Q |
240 |
ttgatcttatttgcaattggctaggtgagt |
269 |
Q |
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| T |
21151151 |
ttgatcttctttgcaattggcttggtgagt |
21151180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 864 - 940
Target Start/End: Original strand, 21146796 - 21146872
Alignment:
| Q |
864 |
tgataactaactataaatatttttcttgagtgtgacattgttgattcaatttttggttaattttatttatgtgatgt |
940 |
Q |
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| T |
21146796 |
tgataactaactataaatatttttcttgagcgtgacattgttgatttaatttttggttaattttatttatgtgatgt |
21146872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 21115990 - 21116072
Alignment:
| Q |
187 |
tattcctgcacttcttgaagatggaatcaaagttcttatatatgctggggaatttgatcttatttgcaattggctaggtgagt |
269 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
21115990 |
tattcctgaacttcttgaggatggaatcaaagttcttatatatgctggggaatttgattttatttgcaattggcttggtgagt |
21116072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 672 - 811
Target Start/End: Original strand, 21151241 - 21151380
Alignment:
| Q |
672 |
gggcagggaattcaaattgggttcatgcaatggggtggtcaggtcaaaaacagttcgcggcatcgaaaacagttcaatttgttgttgatggtaaacaagc |
771 |
Q |
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| T |
21151241 |
gggcagggaattcgaattgggttcatgccatggagtggtcgggtcgaaaccagtttgtggcggccaaaacagttccatttttggttgatggtgctaaagc |
21151340 |
T |
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| Q |
772 |
aggattgttgaatagttatggacctctctcttttctaaag |
811 |
Q |
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| T |
21151341 |
aggattgttgaatagttatggacctctttcttttctaaag |
21151380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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