View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9221_low_11 (Length: 409)

Name: NF9221_low_11
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9221_low_11
NF9221_low_11
[»] chr3 (9 HSPs)
chr3 (214-395)||(4271694-4271875)
chr3 (222-394)||(42346596-42346771)
chr3 (62-126)||(4271538-4271603)
chr3 (1-52)||(4271443-4271494)
chr3 (62-104)||(54540751-54540793)
chr3 (1-49)||(51038840-51038888)
chr3 (1-49)||(52839040-52839088)
chr3 (1-45)||(54539758-54539802)
chr3 (1-49)||(54540840-54540888)
[»] chr6 (4 HSPs)
chr6 (1-49)||(12382761-12382809)
chr6 (1-49)||(3721615-3721663)
chr6 (1-49)||(8822843-8822891)
chr6 (1-49)||(16704547-16704595)
[»] chr8 (4 HSPs)
chr8 (62-112)||(18979072-18979123)
chr8 (1-46)||(42982710-42982755)
chr8 (1-49)||(22221414-22221462)
chr8 (1-49)||(22227756-22227804)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-51)||(49132-49182)
[»] chr5 (5 HSPs)
chr5 (62-104)||(36486449-36486491)
chr5 (62-126)||(1797235-1797300)
chr5 (62-103)||(28538774-28538815)
chr5 (1-49)||(16650905-16650953)
chr5 (1-49)||(28538679-28538727)
[»] chr4 (3 HSPs)
chr4 (62-104)||(31600946-31600988)
chr4 (1-46)||(48781098-48781143)
chr4 (1-49)||(10470549-10470597)
[»] chr1 (4 HSPs)
chr1 (1-55)||(35594220-35594274)
chr1 (1-46)||(11436045-11436090)
chr1 (62-126)||(44411904-44411969)
chr1 (64-104)||(14999381-14999421)
[»] chr7 (2 HSPs)
chr7 (1-60)||(46483546-46483605)
chr7 (1-49)||(48934953-48935001)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 214 - 395
Target Start/End: Original strand, 4271694 - 4271875
Alignment:
Q  214 aagattgcgaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 313  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271694 aagattgcgaggaagatttgaagggtttcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaa 4271793  T
Q  314 gaataattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttgat 395  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4271794 gaatgattggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcgtgagcttgat 4271875  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 222 - 394
Target Start/End: Original strand, 42346596 - 42346771
Alignment:
Q  222 gaggaagatttgaagggtctcacgaaaagtgaggttactgtgattgacacaagttgtcgagtgtggaaggttgataaatttgttttcagaaagaataa-- 319  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||| ||||||| ||||||      
T  42346596 gaggaagatttcaagggtttcacgaaaagtgaggttactgtgatagacacgagttgtccagtgtggaaagttgataagtttgtgttcagaaggaataatg 42346695  T
Q  320 -ttggaaaataagagagaggaaacaaaagaacaagtttgttgcgaagaagaagagtaaattgactcatgagcttga 394  Q
     ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  42346696 tttggaaaatcagagagaggaaacaaaagaacaagtttgtagcgaagaagaagagtaaatcgacccatgagcttga 42346771  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 4271538 - 4271603
Alignment:
Q  62 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 126  Q
    |||||||||||||| |||||||| ||||||||| |||||||| ||| |||||||||||||||||||    
T  4271538 tttgcaactttgatcctttttgtcaattttgaccggtcaatgtctatatgacacgccacatgtgta 4271603  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4271443 - 4271494
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctct 52  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||| ||||    
T  4271443 taaattgtacttttctatctttaactttcaaaaatttgtaattttgatctct 4271494  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 54540793 - 54540751
Alignment:
Q  62 tttgcaactttgattctttttgttaattttgacaggtcaatgc 104  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  54540793 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 54540751  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51038888 - 51038840
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| |||||||||||||| |||||||| ||||| ||| ||||||||||    
T  51038888 taaagtgcacttttccacccttaacttttaaaaagttgcaattttgacc 51038840  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52839040 - 52839088
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| |||| |||||| ||| |||||| |||||||||||||||||||||    
T  52839040 taaagtgcaattttccccctctaacttccaaaaatttgtaattttgacc 52839088  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 54539758 - 54539802
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaatttt 45  Q
    |||| |||||||||||||| |||||||||||||| ||| ||||||    
T  54539758 taaagtgcacttttccacccttaactttcaaaaacttgcaatttt 54539802  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54540888 - 54540840
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  54540888 taaagtgcacttttccccccttaactttcaaaaacttgcaattttgacc 54540840  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12382809 - 12382761
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  12382809 taaagtgcacttttccacctctaatttttaaaaatttgtaattttgacc 12382761  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3721615 - 3721663
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| ||||||||||| ||| ||||||||||||| ||| ||||||||||    
T  3721615 taaagtgcacttttccccctctaactttcaaaaacttgcaattttgacc 3721663  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8822891 - 8822843
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| |||||||||||  |||||||||||||||| ||| ||||||||||    
T  8822891 taaagtgcacttttccctctttaactttcaaaaacttgcaattttgacc 8822843  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16704595 - 16704547
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  16704595 taaagtgcacttttcctcccttaactttcaaaaacttgcaattttgacc 16704547  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 18979123 - 18979072
Alignment:
Q  62 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgac 112  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||||||||    
T  18979123 tttgcaactttgatcctttttgccaattttgacaggtcaatgcctacatgac 18979072  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42982755 - 42982710
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 46  Q
    |||| ||||||||||||||||||| ||| ||||| |||||||||||    
T  42982755 taaagtgcacttttccacctttaagttttaaaaagttgtaattttg 42982710  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22221462 - 22221414
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  22221462 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacc 22221414  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22227804 - 22227756
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  22227804 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacc 22227756  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49182 - 49132
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctc 51  Q
    ||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||    
T  49182 taaattgcacttttccacccttaacttttaaaaacttgcaattttggcctc 49132  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 36486491 - 36486449
Alignment:
Q  62 tttgcaactttgattctttttgttaattttgacaggtcaatgc 104  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  36486491 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 36486449  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 1797300 - 1797235
Alignment:
Q  62 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 126  Q
    |||||||||||||||| |||| | ||||||||| |||||||| |||  || |||||||||||||||    
T  1797300 tttgcaactttgattccttttttcaattttgaccggtcaatgcctatgtggcacgccacatgtgta 1797235  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 28538774 - 28538815
Alignment:
Q  62 tttgcaactttgattctttttgttaattttgacaggtcaatg 103  Q
    |||||||||||||| |||||||| ||||||||| ||||||||    
T  28538774 tttgcaactttgatcctttttgtcaattttgaccggtcaatg 28538815  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 16650953 - 16650905
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| |||||||||||||| |||||||| ||||| ||| ||||||||||    
T  16650953 taaagtgcacttttccacccttaacttttaaaaacttgcaattttgacc 16650905  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28538679 - 28538727
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  28538679 taaagtgcacttttccacccgtaactttcaaaaacttgcaattttgacc 28538727  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 31600988 - 31600946
Alignment:
Q  62 tttgcaactttgattctttttgttaattttgacaggtcaatgc 104  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  31600988 tttgcaactttgatcctttttgtcaattttgaccggtcaatgc 31600946  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 48781143 - 48781098
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 46  Q
    |||| ||||||||||| ||| ||||||||||||||||| |||||||    
T  48781143 taaagtgcacttttccccctctaactttcaaaaatttgcaattttg 48781098  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10470549 - 10470597
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  10470549 taaagtgcacttttccccccttaactttcaaaaacttgcaattttgacc 10470597  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35594220 - 35594274
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctctaag 55  Q
    |||| ||||||||||||||  ||||||||||||| ||| |||||||||| |||||    
T  35594220 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacccctaag 35594274  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11436045 - 11436090
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 46  Q
    |||| ||||||||||| ||||||||||||||||| ||| |||||||    
T  11436045 taaagtgcacttttccccctttaactttcaaaaacttgcaattttg 11436090  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 44411969 - 44411904
Alignment:
Q  62 tttgcaactttgattctttttgttaattttgacaggtcaatg-ctacatgacacgccacatgtgta 126  Q
    |||||||||||||| |||||||  ||||||||| |||||||| |||| || |||||||| ||||||    
T  44411969 tttgcaactttgatcctttttgccaattttgaccggtcaatgcctacgtggcacgccacgtgtgta 44411904  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 14999381 - 14999421
Alignment:
Q  64 tgcaactttgattctttttgttaattttgacaggtcaatgc 104  Q
    |||||||||||| |||||||| ||||||||| |||||||||    
T  14999381 tgcaactttgatcctttttgtcaattttgaccggtcaatgc 14999421  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 46483605 - 46483546
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttga-cctctaagattta 60  Q
    |||| ||||||||||| ||||||||||| ||||| |||||||||||| || ||||||||||    
T  46483605 taaagtgcacttttcc-cctttaacttttaaaaacttgtaattttgatcccctaagattta 46483546  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48935001 - 48934953
Alignment:
Q  1 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 49  Q
    |||| |||| |||||||||  ||||||||||||| ||||||||||||||    
T  48935001 taaagtgcatttttccacccctaactttcaaaaacttgtaattttgacc 48934953  T

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