View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9221_low_12 (Length: 382)
Name: NF9221_low_12
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9221_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 30889513 - 30889581
Alignment:
| Q |
262 |
cattagttatacatattgatgatttgaggattttcatgtgatacattgtgaataaaccaaagttgaaga |
330 |
Q |
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| T |
30889513 |
cattagttatacatattgatgatttgaagattttcatgtgatacattgtgaataaaccaaagttgaaga |
30889581 |
T |
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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 30889310 - 30889373
Alignment:
| Q |
53 |
gagtgcaactcaaatgaatgaatcgacaaatagtaaatatgataagcttcatctttaaaataga |
116 |
Q |
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| T |
30889310 |
gagtgcaactcaaatgaatgaatcgacaaatagtaaatatgataagcttcatcttcaaaataga |
30889373 |
T |
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