View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9221_low_13 (Length: 351)
Name: NF9221_low_13
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9221_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 34316312 - 34316657
Alignment:
| Q |
1 |
ttgataatgttatgtagtgatgtctgttgatggagaaacaagcagggtgatgaaaggtgttcaacatggagcatgtgattatttgcttaagcctataagg |
100 |
Q |
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| T |
34316312 |
ttgataatgttatgtagtgatgtctgttgatggagaaacaagcagggtgatgaaaggtgttcaacatggagcatgtgattatttgcttaagcctataagg |
34316411 |
T |
|
| Q |
101 |
atgaaagaagtgcgaaacatatggcaacatgtcttaagaaaaagaatacgtgaggcaagagaatttgaaagtcttgagggaattcacttaatgaggaatg |
200 |
Q |
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| T |
34316412 |
atgaaagaagtgcgaaacatatggcaacatgtcttaagaaaaagaatacgtgaggcaagagaatttgaaagtcttgagggaattcacttaatgaggaatg |
34316511 |
T |
|
| Q |
201 |
gatcagatcacactgatgatggtaacctgtttgctgtaggaaaagaaatgaacttaatgaagaaaaggaaagattttgatagtaaacatgatgaccaagt |
300 |
Q |
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| T |
34316512 |
gatcagatcacactgatgatggtaacctgtttgctgtaggaaaagaaatgaacttaatgaagaaaaggaaagattttgatagtaaacatgatgaccaagt |
34316611 |
T |
|
| Q |
301 |
attcttagatcaaactttcataaagaaagctagagtagtttggtct |
346 |
Q |
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| T |
34316612 |
attcttagatcaaactttcataaagaaagctagagtagtttggtct |
34316657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 344
Target Start/End: Original strand, 34321968 - 34322005
Alignment:
| Q |
307 |
agatcaaactttcataaagaaagctagagtagtttggt |
344 |
Q |
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| T |
34321968 |
agatcaaacttccataaagaaagctagagtagtttggt |
34322005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 38953208 - 38953054
Alignment:
| Q |
16 |
agtgatgtctgttgatggagaaacaagcagggtgatgaaaggtgttcaacatggagcatgtgattatttgcttaagcctataaggatgaaagaagtgcga |
115 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||||| || ||||| || |||||||||||| | |||||||| |||||||||||||| ||||| |
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| T |
38953208 |
agtgatgtccgtggatggagaaacaagcagggtgatgaaaggcgtccaacacggtgcatgtgattatctccttaagcccataaggatgaaagagttgcga |
38953109 |
T |
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| Q |
116 |
aacatatggcaacatgtcttaagaaaaagaatacgtgaggcaagagaatttgaaa |
170 |
Q |
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|| ||||||||||||||||| |||||||| |||| |||| ||||||||||||| |
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| T |
38953108 |
aatatatggcaacatgtcttcagaaaaaggatacacgaggttagagaatttgaaa |
38953054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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