View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9221_low_2 (Length: 846)
Name: NF9221_low_2
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9221_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 562 - 830
Target Start/End: Original strand, 28621249 - 28621517
Alignment:
| Q |
562 |
cttcctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaacc |
661 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28621249 |
cttcctcttagtttggttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaacc |
28621348 |
T |
|
| Q |
662 |
atcaaaatcatcaatttagcattaatataccacccatgctcatgatcctcccagaacaattctatggtgctgatacgtatacagaaaacaagagatactt |
761 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28621349 |
atcaaaatcatcaatttagcattaatataccacccatgctcatgatcctcccagaacaattctatggtgctgatacgtatacagaaaacaagagatactt |
28621448 |
T |
|
| Q |
762 |
gtatagcattctaagtcacagagagtaccccgttacannnnnnnccagtatgaaaattaaaaggtgtct |
830 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
28621449 |
gcatagcattctaagtcacagagagtaccccattacatttttttccagtatgaaaattaaaaggtgtct |
28621517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 572 - 716
Target Start/End: Complemental strand, 28613041 - 28612897
Alignment:
| Q |
572 |
gtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatcaaaatca |
671 |
Q |
| |
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|||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||| | ||||| |||||||||||| | |||||||||| || |
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| T |
28613041 |
gtttggttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaaccatcaaagcca |
28612942 |
T |
|
| Q |
672 |
tcaatttagcattaatataccacccatgctcatgatcctcccaga |
716 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
28612941 |
tcaatttaggagtaatataccacccatgctcatgatcctctcaga |
28612897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 564 - 721
Target Start/End: Original strand, 29279196 - 29279353
Alignment:
| Q |
564 |
tcctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccat |
663 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| || |||||||||||||||||||| ||||| || |||||| ||||||||||| | | |||||| |
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|
| T |
29279196 |
tcctcttagttttgttcttgataagttggaagaacacatagatcatgttaggtttggtgtggtgtgtaagaattggttttcagttgcaacgcttaaccat |
29279295 |
T |
|
| Q |
664 |
caaaatcatcaatttagcattaatataccacccatgctcatgatcctcccagaacaat |
721 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||| | ||||||||| |||| |||| |
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|
| T |
29279296 |
aaaaatcatcaatttaggattaatgtaccacctatgttgatgatcctctcagaccaat |
29279353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 565 - 711
Target Start/End: Original strand, 29269797 - 29269943
Alignment:
| Q |
565 |
cctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatc |
664 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||| |||||||| | ||| | ||| |||||||| | |||||| |
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|
| T |
29269797 |
cctcttagtttggttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaaccata |
29269896 |
T |
|
| Q |
665 |
aaaatcatcaatttagcattaatataccacccatgctcatgatcctc |
711 |
Q |
| |
|
|||||||||||||||| ||| || ||||||| ||| | ||||||||| |
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|
| T |
29269897 |
aaaatcatcaatttaggattgatgtaccacctatgttaatgatcctc |
29269943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 562 - 695
Target Start/End: Original strand, 28614651 - 28614783
Alignment:
| Q |
562 |
cttcctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaacc |
661 |
Q |
| |
|
|||||||||| ||||||||||| ||| || |||||||| || |||||||||||||| ||||||||||||| | |||||| |||||||||||| | |||| |
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| T |
28614651 |
cttcctcttaatttggttcttg-caagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaacc |
28614749 |
T |
|
| Q |
662 |
atcaaaatcatcaatttagcattaatataccacc |
695 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||| |
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|
| T |
28614750 |
atcaaaaccatcaatttatgattactataccacc |
28614783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 562 - 711
Target Start/End: Original strand, 29287627 - 29287776
Alignment:
| Q |
562 |
cttcctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaacc |
661 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||| | || |||||||||||||||| ||||| || ||||||| ||| |||| ||| | |||| |
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| T |
29287627 |
cttcctcttagtttggttcttgaaaagttggaagtacaaacagactatgttaggtttggtgtggtgtgtaagaattggctatcaattgctaagcttaacc |
29287726 |
T |
|
| Q |
662 |
atcaaaatcatcaatttagcattaatataccacccatgctcatgatcctc |
711 |
Q |
| |
|
|| |||||||||||||||| |||||| ||| ||| ||||| ||||||||| |
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| T |
29287727 |
ataaaaatcatcaatttaggattaatgtactacctatgcttatgatcctc |
29287776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 564 - 632
Target Start/End: Original strand, 29275363 - 29275431
Alignment:
| Q |
564 |
tcctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaa |
632 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| || ||||||||||||||| |||| |||||||| |
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|
| T |
29275363 |
tcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtagtgtgcaa |
29275431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 562 - 680
Target Start/End: Original strand, 29282173 - 29282291
Alignment:
| Q |
562 |
cttcctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaacc |
661 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||| | || |||||||||| ||||| ||||| || ||||||| |||| ||| ||| | |||| |
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|
| T |
29282173 |
cttcctcttagtttggttcttgaaaagttggaagtacaaacagactatgttaggttcggtgttgtgtgtaagaattggctatcagctgctaagcttaacc |
29282272 |
T |
|
| Q |
662 |
atcaaaatcatcaatttag |
680 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
29282273 |
ataaaaatcatcaatttag |
29282291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 751 - 792
Target Start/End: Complemental strand, 28612861 - 28612820
Alignment:
| Q |
751 |
aagagatacttgtatagcattctaagtcacagagagtacccc |
792 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
28612861 |
aagagatccttatatagcattctaagtcacaaagagtacccc |
28612820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 562 - 677
Target Start/End: Original strand, 4235424 - 4235539
Alignment:
| Q |
562 |
cttcctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaacc |
661 |
Q |
| |
|
||||||||||||||| | |||||||| || |||||||| || |||||||| ||||||||| |||||||| | |||||| ||| |||||||||| |||| |
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| T |
4235424 |
cttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcgatcaattgcaaagtttaacc |
4235523 |
T |
|
| Q |
662 |
atcaaaatcatcaatt |
677 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4235524 |
atcaaaatcatcaatt |
4235539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 566 - 677
Target Start/End: Original strand, 49145021 - 49145132
Alignment:
| Q |
566 |
ctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatca |
665 |
Q |
| |
|
|||||| |||| |||||||||| || |||||||| || ||| ||||| |||||||| |||||||| | |||||| ||| |||||||||| | |||||| |
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|
| T |
49145021 |
ctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcgatcaattgcaaagtttagccatca |
49145120 |
T |
|
| Q |
666 |
aaatcatcaatt |
677 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49145121 |
aaatcatcaatt |
49145132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 666
Target Start/End: Original strand, 49149565 - 49149668
Alignment:
| Q |
563 |
ttcctcttagtttggttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaacca |
662 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||| || ||||||||| ||||||||| |||||||| | |||||| ||| |||||||| | ||||| |
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|
| T |
49149565 |
ttcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggtgctgtgtgcaagagttggcgatcaattgcaaagcttaacca |
49149664 |
T |
|
| Q |
663 |
tcaa |
666 |
Q |
| |
|
|||| |
|
|
| T |
49149665 |
tcaa |
49149668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 709
Target Start/End: Complemental strand, 35625935 - 35625804
Alignment:
| Q |
578 |
ttcttgacaaattggaagaacatatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatcaaaatcatcaatt |
677 |
Q |
| |
|
|||||||||| || ||||||| || ||||||||| |||| |||| ||||||||| || ||||| ||| |||||||||| |||||||||||||| || || |
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| T |
35625935 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt |
35625836 |
T |
|
| Q |
678 |
tagcattaatataccacccatgctcatgatcc |
709 |
Q |
| |
|
|| | | || ||| ||||||||| ||||||| |
|
|
| T |
35625835 |
cagaactcatgtactacccatgctaatgatcc |
35625804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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