View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9221_low_4 (Length: 630)
Name: NF9221_low_4
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9221_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 14 - 615
Target Start/End: Complemental strand, 47805527 - 47804925
Alignment:
| Q |
14 |
agaaccaaaaataatcacagattacatgtaagaacacgaatgtgtatcgtatgtaagatttctgaagatagagcttgtgttcaactgaaataaagctaag |
113 |
Q |
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| T |
47805527 |
agaaccaaaaataatcacagattacatgtaagaacacgaatgtgtatcgtatgtaagatttctgaagataaagcttgtgttcaactgaaataaagctaag |
47805428 |
T |
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| Q |
114 |
taatgaattttactatatgtctaaggctannnnnnnn-actcactagagaattgtgattgactataattgttattctaataaaaggattggctacagaat |
212 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805427 |
taatgaattttactatatgtctaaggctatttttttttactcactagagaattgtgattgactataattgttattctaataaaaggattggctacagaat |
47805328 |
T |
|
| Q |
213 |
ttggttttatgaaatctgagtattcaattgctagaatccaaaacatacatctaacttaaacttgttatagatcagaaaaatttgaacatcagtggaaaaa |
312 |
Q |
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| T |
47805327 |
ttggttttatgaaatctgagtattcaattgctagaatccaaaacatacatctaacttaaacttgttatagatcagaaaaatttgaacatcagtggaaaaa |
47805228 |
T |
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| Q |
313 |
ataagatagatattaacatgcatagagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805227 |
ataagatagatattaacatgcatagagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaat |
47805128 |
T |
|
| Q |
413 |
gccagcagggaaaaaagaagttaaaatcatccgcaatatatttgagaaaaaagaaattcaccatatgtatcatacaacttacaacagttaattttgggag |
512 |
Q |
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| T |
47805127 |
gccagcagggaaaaaagaagttaaaatcatccgctatatatttgagaaaaaagaaattcaccatatgtatcatacaacttacaacagttaattttgggag |
47805028 |
T |
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| Q |
513 |
caatccagttttcacttttttccgtaaatcctcacaatcttgctgtaagtaaaacaacacaattaatacgtattccaggataataatattttcactgcaa |
612 |
Q |
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| T |
47805027 |
caatccagttttcacttttttccgtaaatcctcacaatcttgctgtaagtaaaacaacacaattaatacgtattccaggataataatattttcactgcaa |
47804928 |
T |
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| Q |
613 |
att |
615 |
Q |
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||| |
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| T |
47804927 |
att |
47804925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 477 - 615
Target Start/End: Complemental strand, 47807624 - 47807487
Alignment:
| Q |
477 |
atgtatcatacaacttacaacagttaattttgggagcaatccagttttcacttttttccgtaaatcctcacaatcttgctgtaagtaaaacaacacaatt |
576 |
Q |
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| T |
47807624 |
atgtatcatacaacttacaacagttattttcggaaacaagccagtattcactttttgccgcaaatcctcgcattcttgctgtcagtaaaacaagacaatt |
47807525 |
T |
|
| Q |
577 |
aatacgtattccaggataataatattttcactgcaaatt |
615 |
Q |
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| T |
47807524 |
aatatgtattccaggaaaat-atagtttcactgcaaatt |
47807487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 316 - 464
Target Start/End: Complemental strand, 47807961 - 47807812
Alignment:
| Q |
316 |
agatagatattaacatgcatagagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgcc |
415 |
Q |
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|||||||||| |||| | | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |
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| T |
47807961 |
agatagatatgaacaagtaaagagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgca |
47807862 |
T |
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| Q |
416 |
agcagggaaa-aaagaagttaaaatcatccgcaatatatttgagaaaaaa |
464 |
Q |
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| T |
47807861 |
gacagggaaacaaagtagttcaaattttccgctatatatttaagtaaaaa |
47807812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 43295661 - 43295801
Alignment:
| Q |
151 |
actcactagagaattgtgattgactataattgttattctaataaaaggattggctacagaatttggttttatgaaatctgagtattcaattgctagaatc |
250 |
Q |
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||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
43295661 |
actcactagagaattgtgatt-agtatacttgttattctaataaaaggattggctacagaatttggctttatgaaatctgagtattcaattgctaggatc |
43295759 |
T |
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| Q |
251 |
caaaacatacatctaacttaaacttgttatagatcagaaaaa |
292 |
Q |
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| T |
43295760 |
caaaacatacatctaacctaaacttgttatagatcagaaaaa |
43295801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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