View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9221_low_5 (Length: 550)
Name: NF9221_low_5
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9221_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 14 - 532
Target Start/End: Complemental strand, 3659123 - 3658605
Alignment:
| Q |
14 |
cacagacaaaagggaaaatgtttataatcgatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaataccc |
113 |
Q |
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| T |
3659123 |
cacacacaaaagggaaaatgtttataatcgatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaataccc |
3659024 |
T |
|
| Q |
114 |
aacccttctctcatatcaacaacttcatccattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659023 |
aacccttctctcatatcaacaacttcatccattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaaca |
3658924 |
T |
|
| Q |
214 |
acgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcagg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3658923 |
acgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcagg |
3658824 |
T |
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| Q |
314 |
taaaaacttttcaggctctaaccaaatacttggatctctatgtaatttccacacatttgcaaacacacgtgtcccttttggtacataatagtcttgaatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3658823 |
taaaaacttttcaggctctaaccaaatacttggatctctatgtaatttccacacatttgcaaacacacgtgtcccttttggtacataatagtcttgaatg |
3658724 |
T |
|
| Q |
414 |
taacaatcttctgttgcttcatggggtactaatagtggacctggagggtataaccttaaagtttctttcacaattgcttgcaaataaactaggtttttta |
513 |
Q |
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| T |
3658723 |
taacaatcttctgttacttcatggggtactaatagtggacctggagggtataaccttaaagtttctttcacaattgcttgcaaataaactaggtttttta |
3658624 |
T |
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| Q |
514 |
tgtctgatgattctaccct |
532 |
Q |
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| T |
3658623 |
tgtctgatgattctaccct |
3658605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 43 - 532
Target Start/End: Complemental strand, 7843348 - 7842859
Alignment:
| Q |
43 |
gatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaatacccaacccttctctcatatcaacaacttcatc |
142 |
Q |
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| T |
7843348 |
gatagagttcaaagggtaatcgtggggtcaaaacaacttgcaatggagttaacttaggtaaagttattcccaaaccttctctcatatcaacaacttcatc |
7843249 |
T |
|
| Q |
143 |
cattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaacaacgatccaggacaagctcttctccctaat |
242 |
Q |
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|||||||||||||||||||||||||||||| | || ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7843248 |
cattggcacttccaaatcaaacccatgaagaagacatgcaagtgtaatgagactattttgtgtagcaaacaaagatccaggacaagctcttctccctaat |
7843149 |
T |
|
| Q |
243 |
ccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcaggtaaaaacttttcaggctctaaccaaatac |
342 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7843148 |
ccaaaaggaaggtactcaaaatgatgactttcatgatcaatttctccattctcattaataaacctttcaggtaaaaacttttcaggctctgaccaaatac |
7843049 |
T |
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| Q |
343 |
ttggatctctatgtaatttccacacatttgcaaacacacgtgtcccttttggtacataatagtcttgaatgtaacaatcttctgttgcttcatggggtac |
442 |
Q |
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| T |
7843048 |
ttggatctctatgtaatttccatacattgaaaaatacacgtgttccttttggtacataatagccttgaatgttacaatcttctgtggcttcatggggtgc |
7842949 |
T |
|
| Q |
443 |
taatagtggacctggagggtataaccttaaagtttctttcacaattgcttgcaaataaactaggttttttatgtctgatgattctaccct |
532 |
Q |
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| T |
7842948 |
tagtagtggagctgctgggtataacctcaaagtttcttttaaaattgcttgcaaataaaccaagttttttatgtccgacgattctaccct |
7842859 |
T |
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