View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9221_low_7 (Length: 544)
Name: NF9221_low_7
Description: NF9221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9221_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 16829803 - 16830331
Alignment:
| Q |
1 |
gtcaaactagagttcaaaatattcccgattttcccgtgcacaatcatgctcaacgcttgcttagctcaactctccacattctcagtcgaacaagccgcca |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
16829803 |
gtcaaactagtcttcaaaatattcccgattttcgcgtgcacaatcatgctcaacgcttgcttagctcaactctccacattctcagtcgaacaagccgcga |
16829902 |
T |
|
| Q |
101 |
caatgaacacagccctctttccctccttcaaagttccgcctgcttcattaccggttttcccggtactcttcctcatgatcctagcaccaatatatgatca |
200 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16829903 |
caatgaacacaaccctcttctcctccttcaaagttccgcctgcttcattaccggttttcccggtactcttcctcatgatcctagcaccaatatatgatca |
16830002 |
T |
|
| Q |
201 |
cattataatcccttatgcaagaaaagttacaaaatcagaagcaggaataactcatctccaaagaattggaattggactaatactctctatagttgcaatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16830003 |
cattataatcccttatgcaagaaaagttacaaaatcagaagcaggaataactcatctccaaagaattggaattgggctaatactctctatagttgcaatg |
16830102 |
T |
|
| Q |
301 |
gctatagctgcaattgttgaaatcaaaagacaaaaaatagcatcacattcaaatgaaaagaatccattacctatttcatttctttggataggttttcagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16830103 |
gctatagctgcaattgttgaaatcaaaagacaaaaaatagcatcacactcaaatgaaaaaaatccattacctatttcatttctttggataggttttcagt |
16830202 |
T |
|
| Q |
401 |
atttatttcttggttcagctgatcttttcacattggctggattactggaatttttcttctcagaagcaccttcaagtatgagatcattagcaacatcact |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16830203 |
atttatttcttggttcagctgatcttttcacattggctggattactggaatttttcttctcagaagcaccttcaagtatgagatcattagcaacatcact |
16830302 |
T |
|
| Q |
501 |
ttcttgggcttctttggcaatgggatatt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
16830303 |
ttcttgggcttctttggcaatgggatatt |
16830331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 57 - 302
Target Start/End: Complemental strand, 25170697 - 25170455
Alignment:
| Q |
57 |
ttgcttagctcaactctccacattctcagtcgaacaagccgccacaatgaacacagccctctttccctccttcaaagttccgcctgcttcattaccggtt |
156 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||| |||||||||||| || | || || ||||| || || ||||||||||| || |
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| T |
25170697 |
ttgcttagctcaactatcaacattctcagtcgaacaagccgcgacaatgaacacaaaattcggt---tcattaaaagtaccaccggcttcattaccaatt |
25170601 |
T |
|
| Q |
157 |
ttcccggtactcttcctcatgatcctagcaccaatatatgatcacattataatcccttatgcaagaaaagttacaaaatcagaagcaggaataactcatc |
256 |
Q |
| |
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||||||||||| ||| | ||||||||||||||||| ||||||||||| || || || | |||||||||| |||||||||||| |||||||| |||| |
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| T |
25170600 |
ttcccggtacttttcataatgatcctagcaccaatttatgatcacataattataccctttgcaagaaaatacacaaaatcagaaatgggaataacacatc |
25170501 |
T |
|
| Q |
257 |
tccaaagaattggaattggactaatactctctatagttgcaatggc |
302 |
Q |
| |
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| |||||||||||||||||| || | || |||||| |||||||||| |
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|
| T |
25170500 |
ttcaaagaattggaattggattagtcctatctataattgcaatggc |
25170455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 394 - 519
Target Start/End: Complemental strand, 25170351 - 25170226
Alignment:
| Q |
394 |
tttcagtatttatttcttggttcagctgatcttttcacattggctggattactggaatttttcttctcagaagcaccttcaagtatgagatcattagcaa |
493 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||| | |||||||| | || | |
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| T |
25170351 |
tttcagtacttgtttcttggttcagctgatcttttcactatggctggtttgttggaatttttcttcacagaagcaccaattaaaatgagatcttgggcta |
25170252 |
T |
|
| Q |
494 |
catcactttcttgggcttctttggca |
519 |
Q |
| |
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|||||||| ||||||||||||||||| |
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|
| T |
25170251 |
catcacttacttgggcttctttggca |
25170226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 412 - 529
Target Start/End: Original strand, 44613203 - 44613320
Alignment:
| Q |
412 |
ggttcagctgatcttttcacattggctggattactggaatttttcttctcagaagcaccttcaagtatgagatcattagcaacatcactttcttgggctt |
511 |
Q |
| |
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||||||||||||||||| ||||||||||| | |||| ||||||||| | || ||||||| |||||||| || ||||| ||||||||||| ||||||| |
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| T |
44613203 |
ggttcagctgatctttttacattggctggtatgatggagtttttcttcactgaggcaccttggagtatgaggtctttagctacatcactttcatgggctt |
44613302 |
T |
|
| Q |
512 |
ctttggcaatgggatatt |
529 |
Q |
| |
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| ||||| |||||||||| |
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| T |
44613303 |
cattggctatgggatatt |
44613320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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