View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9222_high_1 (Length: 968)
Name: NF9222_high_1
Description: NF9222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9222_high_1 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 807; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 13 - 949
Target Start/End: Original strand, 37588974 - 37589909
Alignment:
| Q |
13 |
atggacatcagaagatcactcacatttccagaatttatttatattgtgttacaatgtgatagcgtcaagagctggcaggggagaagcatatgcaattgca |
112 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588974 |
atggacatcagaagatcgctcacattttcagaatttatttatattgtgttacaatgtgatagcgtcaagagctggcaggggagaagcatatgcaattgca |
37589073 |
T |
|
| Q |
113 |
cgactcggaccatctcgctctgatttgggttcacttgcagactagaggatccactaagtggttacggttatatcttctaatgcaaaggaacgatttatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37589074 |
cgactcggaccatctcgctctgatttgggttcacttgcagactagaggatccactaagtggttacggttatatcttctaatgcaaaggaacgatttatgt |
37589173 |
T |
|
| Q |
213 |
agtaggcatggcaattagaataggataggaaaaaataagctaagannnnnnnnnncttcttctattcatgtgtgagcatcaataaggttttaatcaccct |
312 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
37589174 |
agtaggtatcgcaattagaataggataggaaaaaataagctaagattttttttt-cttcttccattcatttgtgagcatcaataaggttttaatcaccct |
37589272 |
T |
|
| Q |
313 |
attgtattgatgtactttaagcaataatctcacttatcactgtcttatcaaatacagtttattgtacacctaattgtaatgaaagaccaactattttatt |
412 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
37589273 |
attgtatggatgtactttaagcaataatctcacttatcactgtcttatcaaatacagtttattttacacctaattgtaatgaaagaccaactattttttt |
37589372 |
T |
|
| Q |
413 |
atgtggtcatgctattaccattactttttctcttacaaaactattactgttacgatgtcnnnnnnnnnnnnntatgttactgttactttttcttggaaaa |
512 |
Q |
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| T |
37589373 |
atgtggtcatgctattaccattactttttctcttacaaaactattactgttacgatgtcaaaaaaaaaaaactat--tactgttactttttcttggaaaa |
37589470 |
T |
|
| Q |
513 |
tggtattgctagagatgaaatctaatctaatttactttacactcagaaaattaatacagtaaagtttattatatgatcatatttttgcaataatcttcaa |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37589471 |
tggtattgctagagatgaaatctaatctaatttactttacactcagaaaattaatacagtaaagtttattatatgatcatatttttgcaataatcttcaa |
37589570 |
T |
|
| Q |
613 |
tatgattgccatttaaactactgtttttctcttcttgaaaaatggtgttgatgaaatatgacataaatcaaaaagccaaaaactactcaaaggcactata |
712 |
Q |
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| T |
37589571 |
tatgattgccatttaaactactgtttttctcttcttgaaaaatggtgttgatgaaatatgacataaatcaaaaagccaaaaactactcaaaggcactata |
37589670 |
T |
|
| Q |
713 |
tggcctttacaaaatattggttcagacatttttataaaacaaaaataattattcgttcagaactaccatgcattcaaaggatatatactgataaatacta |
812 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37589671 |
tggcctttacaaaatattggttcagacatttttataaaacaaaaataattattcgttcagaactaccatgcattcaaaggatatatactgataaatacta |
37589770 |
T |
|
| Q |
813 |
aacccttaaatatgccatcaactgacgaaatttatgaaaaaatataaagccactcactagatccacctatgtttcacatctagaaaaatgtttcaactca |
912 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37589771 |
aacccttaaatatgccatcaactgacgaaatttatgaaaaaatataaagccactcactagatccacctatgtttcacatctagaaaaatgtttcaactca |
37589870 |
T |
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| Q |
913 |
gtactagactagtagta--tcacttctcatcctaactaa |
949 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |
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| T |
37589871 |
gtactagactagtagtaattcacttctcatcctaactaa |
37589909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 489 - 697
Target Start/End: Original strand, 37581501 - 37581702
Alignment:
| Q |
489 |
ttactgttactttttcttggaaaatggtattgctagagatgaaatctaatctaatttactttacactcagaaaattaatacagtaaagtttattatatga |
588 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||| |||||||||||||||||| | | ||||||||||| |
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| T |
37581501 |
ttactgttactttttcttggaaaatggtattgctggagatgaaatcaaat-----ttatttttcactcagaaaattaataccggtt-gattattatatga |
37581594 |
T |
|
| Q |
589 |
tcatatttttgcaataatcttcaatatgattgccatttaaactactgtttttctcttcttgaaaaatggtgttgatgaaatatgacataaatcaaaaagc |
688 |
Q |
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||||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| | |
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| T |
37581595 |
tcatattcttgcaaaaatcttctatatgattgccattaaaactactgtttttctcttcttgaaaaatggtgttgacg-aatatgaaataaatcaaaaatc |
37581693 |
T |
|
| Q |
689 |
caaaaacta |
697 |
Q |
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| T |
37581694 |
cgaaaacta |
37581702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 37575260 - 37575439
Alignment:
| Q |
31 |
ctcacatttccagaatttatttatattgtgttacaatgtgatagcgtcaagagctggcag-gggagaagcatatgcaattgcacgactcggaccatctcg |
129 |
Q |
| |
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|||||| || |||||||| |||||| |||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||| |||| ||||||| | |
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| T |
37575260 |
ctcacaatttcagaatttctttataccgtgttacaatttgatagcgtcaggagctgtcagagggagaagcatatgcaattgcagaactcataccatctgg |
37575359 |
T |
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| Q |
130 |
ctctgatttgg-----gttcacttgcagactagaggatccact---aagtggttacggttatatcttctaatgcaaaggaac |
203 |
Q |
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| T |
37575360 |
ctctgattcggatgtccttcacttgcagactagaggatctactaccaagtggttgccat--tatcttctaatgcaaaggaac |
37575439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 37581337 - 37581422
Alignment:
| Q |
306 |
tcaccctattgtattgatgtactttaagcaataatctcacttatcactgtcttatcaaatacagtttattgtacacctaattgtaat |
392 |
Q |
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| T |
37581337 |
tcaccttattgtatggatgtacttta-gcaatactctcccttatcactatcttattaaatacagtttattttaaacctaattgtaat |
37581422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 23805 - 23737
Alignment:
| Q |
51 |
ttatattgtgttacaatgtgatagcgtcaagagctggcag-gggagaagcatatgcaattgcacgactc |
118 |
Q |
| |
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||||||| ||||||||||||| || |||| |||||||||| |||||||||||||||||||||| ||||| |
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| T |
23805 |
ttatattctgttacaatgtgacagtgtcaggagctggcagagggagaagcatatgcaattgcaggactc |
23737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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