View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9222_high_9 (Length: 227)
Name: NF9222_high_9
Description: NF9222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9222_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 5767089 - 5767279
Alignment:
| Q |
21 |
ttcgtatctcggatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaat |
120 |
Q |
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| T |
5767089 |
ttcgtatctcagatcaatttctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaat |
5767188 |
T |
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| Q |
121 |
ctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtct |
211 |
Q |
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| T |
5767189 |
ctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtct |
5767279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 14003711 - 14003525
Alignment:
| Q |
25 |
tatctcggatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctca |
124 |
Q |
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| T |
14003711 |
tatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctca |
14003612 |
T |
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| Q |
125 |
tttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtct |
211 |
Q |
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| T |
14003611 |
tttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgctgctgagttgtct |
14003525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 17627610 - 17627655
Alignment:
| Q |
147 |
gtatccaacatttggatcttcaatatactgattttttgaatgatca |
192 |
Q |
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| T |
17627610 |
gtatccaacatttggatcttcagtatgcttattttttgaataatca |
17627655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 641580 - 641446
Alignment:
| Q |
41 |
ctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagt |
140 |
Q |
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| T |
641580 |
ctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaaga |
641481 |
T |
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| Q |
141 |
cgaaacgtatccaacatttggatcttcaatatact |
175 |
Q |
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| T |
641480 |
gtaaatgtttacaacatctggatcttcaatatact |
641446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 1601073 - 1601013
Alignment:
| Q |
23 |
cgtatctcggatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg |
83 |
Q |
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| T |
1601073 |
cgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggcttg |
1601013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 3438081 - 3438226
Alignment:
| Q |
24 |
gtatctcggatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctc |
123 |
Q |
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||||| ||||| |||| || ||||| |||||||| | | ||||||||||||| |||||||| ||| | ||||| |||| |||| |||| ||| ||||| |
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| T |
3438081 |
gtatcccggatgaattactttcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatctt |
3438180 |
T |
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| Q |
124 |
atttttgttatctaagtcgaaacgtatccaacatttggatcttcaa |
169 |
Q |
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| | ||||||| |||| || |||| |||||||||||||||||| |
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| T |
3438181 |
ttctctgttatccaagtgtcaatgtatacaacatttggatcttcaa |
3438226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 38266985 - 38267081
Alignment:
| Q |
26 |
atctcggatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatct |
122 |
Q |
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||||| ||||| ||||| ||||| ||||||||| ||||||||||||||| ||| |||| ||| | |||||| |||| || |||| |||||||||| |
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| T |
38266985 |
atctccgatcacttcctttcctctattgcaatgcaaagtcttcctttgacgagccttggcctcggatattgcaccggctacactttctctggaatct |
38267081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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