View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9222_low_11 (Length: 334)
Name: NF9222_low_11
Description: NF9222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9222_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 316
Target Start/End: Original strand, 43439626 - 43439916
Alignment:
| Q |
25 |
catgtttacaattttttatttgaaacataaggtgactgtaagttagtgaggtgtgtaaacaatttgataagacttatnnnnnnnnnntgtaaataagtaa |
124 |
Q |
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| T |
43439626 |
catgtttacaattgtttatttgaaacataaggtgaacgtaaattagtgaggtgtgtaaacaatttgataagacttataaaaaaaaa-tgtaaatgagtaa |
43439724 |
T |
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| Q |
125 |
gtgggtttaacttgctaatttatacctcagtgtttttaggtaggtgtaaatcagtagttccatataacggtgtcggtgttattttttacattagcagtgt |
224 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43439725 |
gtgggtgtaacttgctaatttatacctcagtgtttttaggtaggtgtaaattaatagccccatataacagtgtcggtgttattttttacattagcagtgt |
43439824 |
T |
|
| Q |
225 |
caatatatagtgtttatatcatatcaggtgtcgtgttggagtgcatactctataagctttgtttacctttatgcctcttgtatcgggtatta |
316 |
Q |
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| T |
43439825 |
caatatataatgtttgtatcatgtgaggtgtcgtgtcggagtgcatactctataagctttgtctacctttatgcctcttgtatcgggtatta |
43439916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 33473806 - 33473864
Alignment:
| Q |
122 |
taagtgggtttaacttgctaatttatacctcagtgtttttaggtaggtgtaaatcagta |
180 |
Q |
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| T |
33473806 |
taagtgggtgtaacttgctaatttacaccttagtgtttttaggtggatgtaaattagta |
33473864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 43439368 - 43439328
Alignment:
| Q |
135 |
cttgctaatttatacctcagtgtttttaggtaggtgtaaat |
175 |
Q |
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| T |
43439368 |
cttgctaatttacaccttagtgtttttaggtgggtgtaaat |
43439328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 10142769 - 10142846
Alignment:
| Q |
26 |
atgtttacaattttttatttgaaacataaggtgactgtaagttagtgagg--tgtgtaaacaatttgataagacttat |
101 |
Q |
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| T |
10142769 |
atgtttacaattgtttatttgaaacataaagtgggtgtaaattagtgaggtatgtgcaaacaatttgataaaacttat |
10142846 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 12458519 - 12458569
Alignment:
| Q |
125 |
gtgggtttaacttgctaatttatacctcagtgtttttaggtaggtgtaaat |
175 |
Q |
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|||||| ||||||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
12458519 |
gtgggtgtaacttgctaatttacaccttagtgtttttaggtgggtgtaaat |
12458569 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 9477537 - 9477594
Alignment:
| Q |
123 |
aagtgggtttaacttgctaatttatacctcagtgtttttaggtaggtgtaaatcagta |
180 |
Q |
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|||||||| || |||||||||||| |||| ||||||||||||| ||||||||| |||| |
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| T |
9477537 |
aagtgggtgtagcttgctaatttaaaccttagtgtttttaggtgggtgtaaattagta |
9477594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 10862797 - 10862744
Alignment:
| Q |
122 |
taagtgggtttaacttgctaatttatacctcagtgtttttaggtaggtgtaaat |
175 |
Q |
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||||||||| || |||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
10862797 |
taagtgggtgtagcttgctaatttacaccttagtgtttttaggtgggtgtaaat |
10862744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 33483394 - 33483358
Alignment:
| Q |
139 |
ctaatttatacctcagtgtttttaggtaggtgtaaat |
175 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||| |
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| T |
33483394 |
ctaatttataccttagtgtttttaggtgggtgtaaat |
33483358 |
T |
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