View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9222_low_3 (Length: 445)
Name: NF9222_low_3
Description: NF9222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9222_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 160 - 432
Target Start/End: Complemental strand, 5285573 - 5285301
Alignment:
| Q |
160 |
tgtccaaagctttgtatgaagatgtgattattaacatgtatttctgttctaatcccgagcaaacaaatccactaaaccagaaacttatggagtatgagac |
259 |
Q |
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| T |
5285573 |
tgtccaaagctttgtatgaagatgtgattattaacatgtatttctgttctaatcccgagcaaataaatccactaaaccagaaacttatggagtatgagac |
5285474 |
T |
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| Q |
260 |
ttgcgactctgggccaaccatgtcttaaaagtttaaatcttccatcagcacatcgacgtaacatctccaaaagcaccaaaatcatctcacatggctttct |
359 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5285473 |
ttgcgactctgggccaagtatgtcttaaaagtttaaatcttccatcagcacatcgacataacatctccaaaagcaccaaaatcatctcgcatggctttct |
5285374 |
T |
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| Q |
360 |
tcctttccaatgaagaagaagttcggttaaaacagaaacacaatctgattccactgctcttactctttttctc |
432 |
Q |
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| T |
5285373 |
tcctttccaatgaagaagaagttcggttaaaacagaaacacaatctgattccactgctcttactctttttctc |
5285301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 26377506 - 26377558
Alignment:
| Q |
95 |
tttttcaaatatgtttgacatgtgtgaaattgaaccataaggactaattgatc |
147 |
Q |
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| T |
26377506 |
tttttcaaatatgtttcgcatgtgtgaaattggaccatgtgggctaattgatc |
26377558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 284 - 431
Target Start/End: Complemental strand, 24899771 - 24899624
Alignment:
| Q |
284 |
ttaaaagtttaaatcttccatcagcacatcgacgtaacatctccaaaagcaccaaaatcatctcacatggctttcttcctttccaatgaagaagaagttc |
383 |
Q |
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| T |
24899771 |
ttaaaagttcaaatcttccatcagcacattgacataacatctccaaaagcaccaaaatcatctcacatggctttctttctttgcaatcaagaagaagttc |
24899672 |
T |
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| Q |
384 |
ggttaaaacagaaacacaatctgattccactgctcttactctttttct |
431 |
Q |
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| ||| || |||||||| ||||||| | |||| ||||||| ||||| |
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| T |
24899671 |
tatcaaagcaaaaacacaacctgattcaattgcttttactctatttct |
24899624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 284 - 431
Target Start/End: Complemental strand, 24907230 - 24907083
Alignment:
| Q |
284 |
ttaaaagtttaaatcttccatcagcacatcgacgtaacatctccaaaagcaccaaaatcatctcacatggctttcttcctttccaatgaagaagaagttc |
383 |
Q |
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|||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |
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| T |
24907230 |
ttaagagttcaaatcttccatcagcacattgacataacatctccaaaagcaccaaaatcatctcacatggctttctttctttgcaatcaagaagaagttc |
24907131 |
T |
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| Q |
384 |
ggttaaaacagaaacacaatctgattccactgctcttactctttttct |
431 |
Q |
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| T |
24907130 |
tatcaaagcataaacacaacctgattcaattgcttttactctatttct |
24907083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 289 - 431
Target Start/End: Original strand, 24890201 - 24890343
Alignment:
| Q |
289 |
agtttaaatcttccatcagcacatcgacgtaacatctccaaaagcaccaaaatcatctcacatggctttcttcctttccaatgaagaagaagttcggtta |
388 |
Q |
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|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| | | |
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| T |
24890201 |
agttcaaatcttccatcagcacattgacataacatctccaaaagcaccaaaatcatctcacatggctttctttctttgcaatcaagaagaagttctatca |
24890300 |
T |
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| Q |
389 |
aaacagaaacacaatctgattccactgctcttactctttttct |
431 |
Q |
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| T |
24890301 |
aagcataaacacaacctgattcaattgcttttactctatttct |
24890343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 366223 - 366096
Alignment:
| Q |
82 |
ttccttactatgatttttcaaatatgtttgacatgtgtgaaattgaaccataaggactaattgatccagaaattaatttgtccaaagctttgtatgaaga |
181 |
Q |
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|||||| | |||||||||||||||||| ||||| ||||||||||| ||||| || |||||||||||| ||||| ||||| | |||||||| ||| || |
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| T |
366223 |
ttccttgccatgatttttcaaatatgtctgacaagtgtgaaattggaccatgggggctaattgatccaacaattattttgtgccaagctttgggtgatga |
366124 |
T |
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| Q |
182 |
tgtgattattaacatgtatttctgttct |
209 |
Q |
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|||||||||| |||| |||||||||| |
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| T |
366123 |
tgtgattatttacatacctttctgttct |
366096 |
T |
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