View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9222_low_7 (Length: 388)
Name: NF9222_low_7
Description: NF9222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9222_low_7 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 55908343 - 55907983
Alignment:
| Q |
14 |
agacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55908343 |
agacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataa |
55908244 |
T |
|
| Q |
114 |
ttatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55908243 |
ttatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaat |
55908144 |
T |
|
| Q |
214 |
taagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagactt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55908143 |
taagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagactt |
55908044 |
T |
|
| Q |
314 |
caaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55908043 |
caaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttc |
55907983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 54 - 273
Target Start/End: Complemental strand, 3438228 - 3438006
Alignment:
| Q |
54 |
ttttgaagatccaaatgttgtatac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctca |
150 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||| | ||| || ||||| |||||||||||||||| ||||||||||| ||||||| |
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|
| T |
3438228 |
ttttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctca |
3438129 |
T |
|
| Q |
151 |
aaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagcc |
250 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||||||| ||| | |||||||||||| |||||||||||| || |||| |||||||||| || | |
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|
| T |
3438128 |
aaggaagacctccaattgcaatagaggaaagtaattcatccgggatacatgaagacgacaaatcaagacaagttaatcccttcagactcaccaacaagtc |
3438029 |
T |
|
| Q |
251 |
aatgaagtttgaaccaatgttgt |
273 |
Q |
| |
|
|||||||| |||| |||||||| |
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| T |
3438028 |
aatgaagtgtgaattaatgttgt |
3438006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 360
Target Start/End: Original strand, 547434 - 547743
Alignment:
| Q |
51 |
gcattttgaagatccaaatgttgtatacga---cacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttc |
147 |
Q |
| |
|
|||||||||||||| |||||||| ||| | |||||||| || ||| | |||||||| ||||| |||||||| ||||||||||||||||| ||| |
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| T |
547434 |
gcattttgaagatctaaatgttggatatgttggcacttggacaaaaaacaagatattccagcataactatagccgaaacaattttggaggacaagctttc |
547533 |
T |
|
| Q |
148 |
tcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacga |
247 |
Q |
| |
|
||||||||| | || ||||||||||||| | ||||| ||||||||| || ||||| |||| ||||||||||||||| ||||||| || |||||| |
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|
| T |
547534 |
tcaaaggaatagcttccattgcaatagaggagagcaacatatccgagatacgtgaagaccgaaaatcaagacaagttaagcccttcaaacacatcaacga |
547633 |
T |
|
| Q |
248 |
gccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgaca |
347 |
Q |
| |
|
| |||| | || |||| || ||||||| ||||| |||| |||| ||| ||| |||||| |||||| |||||| |||||||||||||||| | |
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| T |
547634 |
gtcaataaggtgcgaactaa---tgtcatgccttccctttgacggccatttaatggagagagacctcaaagatggtctcacacggatagcagaagctatg |
547730 |
T |
|
| Q |
348 |
ccatcatgagtta |
360 |
Q |
| |
|
||||||| ||||| |
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|
| T |
547731 |
ccatcattagtta |
547743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 253
Target Start/End: Complemental strand, 21833929 - 21833760
Alignment:
| Q |
84 |
ttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagca |
183 |
Q |
| |
|
|||||||||||| | | |||||| ||||| ||||||||||||| ||| | |||||||| || | |||||||||||| || |||||||||| | || | |
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|
| T |
21833929 |
ttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta |
21833830 |
T |
|
| Q |
184 |
attcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
253 |
Q |
| |
|
| |||||| |||| |||||| |||| |||||||||| || || ||||||||||| || |||||||| |
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|
| T |
21833829 |
actcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcactaatgagccaat |
21833760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 641482 - 641574
Alignment:
| Q |
83 |
cttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaataga |
175 |
Q |
| |
|
||||||||||||| | | |||||| ||||| |||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||| |
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|
| T |
641482 |
cttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtcaaaggaaggcctttcattgcaataga |
641574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 6007006 - 6007054
Alignment:
| Q |
205 |
acgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
253 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
6007006 |
acgacaaatcaagacaagttaagcctttcaatttcaccaacgagtcaat |
6007054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 1037279 - 1036919
Alignment:
| Q |
14 |
agacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1037279 |
agacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataa |
1037180 |
T |
|
| Q |
114 |
ttatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaat |
213 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
1037179 |
ttatagctggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgaaatgcgcaaagatgacaaat |
1037080 |
T |
|
| Q |
214 |
taagacaagttaagccattcaaactcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagactt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
1037079 |
taagacaagttaagccattcaaactcaccaacgagccaatgaagtttgcaccaatgttgtcatgccttccatttgttctccatctaacaaatagagactt |
1036980 |
T |
|
| Q |
314 |
caaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1036979 |
caaagtaggtctctcacggatagcagaagcgacatcatcatgagttaaaaatggacatttc |
1036919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 401 - 507
Alignment:
| Q |
14 |
agacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacgacacttggataacaaagagtatattccaacataa |
113 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
401 |
agacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgttgt---------ttggataacaaagagtagattccagcataa |
491 |
T |
|
| Q |
114 |
ttatagccggtgcaat |
129 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
492 |
ttatagccggtgcaat |
507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 288
Target Start/End: Complemental strand, 17627631 - 17627397
Alignment:
| Q |
57 |
tgaagatccaaatgttgtatac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaag |
153 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||| |||||||| |||| ||||| |||||| | ||||||||| |||||||||| |
|
|
| T |
17627631 |
tgaagatccaaatgttggatacattgacacatggataacaaagaaaatattccagaataactatagttaatgcaatctctgaggacaagccttctcaaag |
17627532 |
T |
|
| Q |
154 |
gaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
253 |
Q |
| |
|
|| | || | |||||||||||| | || || ||| |||||||||||| ||| ||||| |||| ||||| || ||||||||||||| |||| || | |
|
|
| T |
17627531 |
aaataacttcaattgcaatagaagagaggaacatatctgagatgcgcaaaaacggcaaatcaagatttgttaaccctttcaaactcaccagcgagtcagt |
17627432 |
T |
|
| Q |
254 |
gaagtttgaaccaatgttgtcatggcttccatttg |
288 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| |
|
|
| T |
17627431 |
aaagtgtgaactgatgttgtcatggcttccatttg |
17627397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 6436757 - 6436798
Alignment:
| Q |
59 |
aagatccaaatgttgtatac-gacacttggataacaaagagt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6436757 |
aagatccaaatgttgtatactgacacttggataacaaagagt |
6436798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 6403407 - 6403458
Alignment:
| Q |
59 |
aagatccaaatgttgtatacg---acacttggataacaaagagtatattcca |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6403407 |
aagatccaaatgttgtatacatctacacttggataacagagagtatattcca |
6403458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 6594176 - 6594125
Alignment:
| Q |
59 |
aagatccaaatgttgtatac---gacacttggataacaaagagtatattcca |
107 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
6594176 |
aagattcaaatgttgtatacatcgacacttggataacaaagagtacattcca |
6594125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 17352166 - 17352303
Alignment:
| Q |
55 |
tttgaagatccaaatgttgtatacga---cacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaa |
151 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||||||||||| | ||||| ||||| | ||||| ||| ||| ||| ||||||||||| || || |
|
|
| T |
17352166 |
tttgaagatcctaatgttggatacgttggcacttggataacaaagaaaaagttccagcataactgtagccagtggaatattgaaggacaagtctcctgaa |
17352265 |
T |
|
| Q |
152 |
aggaagacctcccattgcaatagaaaaaagcaattcat |
189 |
Q |
| |
|
||||| ||| || |||||||||| | |||||||||| |
|
|
| T |
17352266 |
aggaaaaccctcctttgcaatagaggagagcaattcat |
17352303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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