View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9222_low_9 (Length: 346)

Name: NF9222_low_9
Description: NF9222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9222_low_9
NF9222_low_9
[»] chr3 (2 HSPs)
chr3 (13-330)||(25422077-25422395)
chr3 (192-319)||(22522581-22522708)
[»] chr4 (2 HSPs)
chr4 (19-330)||(26622421-26622735)
chr4 (249-304)||(11116161-11116216)
[»] chr8 (3 HSPs)
chr8 (13-330)||(7175875-7176191)
chr8 (82-322)||(25938861-25939102)
chr8 (257-306)||(30273697-30273746)
[»] chr7 (2 HSPs)
chr7 (82-330)||(36877613-36877863)
chr7 (75-289)||(20463609-20463824)
[»] chr2 (4 HSPs)
chr2 (75-306)||(11524103-11524335)
chr2 (247-322)||(40492432-40492508)
chr2 (247-306)||(13221825-13221884)
chr2 (257-313)||(5595135-5595191)
[»] chr1 (3 HSPs)
chr1 (248-322)||(3158417-3158491)
chr1 (257-306)||(3215060-3215109)
chr1 (249-321)||(30091970-30092042)
[»] chr5 (1 HSPs)
chr5 (75-233)||(34673595-34673754)
[»] chr6 (1 HSPs)
chr6 (241-306)||(5477353-5477418)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 25422395 - 25422077
Alignment:
Q  13 gagacgatcgctggaattttgtgaaagcaagaacgacgtggtgaagccc--tgtatgtgttggatataggtgaagctttgggtctgtcacaagctattca 110  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  25422395 gagacgatcgctgga-ttttgtgaaagcaagaacgacgtggtgaagtcccgtgtgtgtgttggatataggtgaagctttgggtctgtcacaagctatcca 25422297  T
Q  111 gtgggttcatgatctacaactcccaaagtcgatttcgatttggatgccaagagggttgtagactatttcaacaccggtaacaatgatatctcagaatttg 210  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25422296 gtgggttcatgatctacaactcccaaagtcgatttcgagttggatgccaagagggttgtagactatttcaacaccggtaataatgatatctcagaatttg 25422197  T
Q  211 gagtcattattgatgattgtagaaagcggtgtaattcttattttggaaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcataattt 310  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  25422196 gagtcattattgatgattgtaggaagcggtgtaattcttattttggaaactctaaggtagagttttgtaagagacaagcgaatgaagtcgctcataattt 25422097  T
Q  311 agctcgagaggctacattct 330  Q
    ||| ||||||||||||||||    
T  25422096 agcccgagaggctacattct 25422077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 22522708 - 22522581
Alignment:
Q  192 aatgatatctcagaatttggagtcattattgatgattgtagaaagcggtgtaattcttattttggaaactctaaggtagagttttgtaggagacaagcaa 291  Q
    |||||||| || |||||||||| ||| || ||||| ||||| |||   || |||  || ||||| |||||||||||| |||||| || |||||||||| |    
T  22522708 aatgatatatccgaatttggagccataatggatgaatgtaggaagaattgcaatgatttttttgaaaactctaaggtggagtttagtcggagacaagcga 22522609  T
Q  292 atgaagtcgctcataatttagctcgaga 319  Q
    |||  |||||||||| | | ||||||||    
T  22522608 atgtggtcgctcatactcttgctcgaga 22522581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 26622421 - 26622735
Alignment:
Q  19 atcgctggaattttgtgaaagcaagaacgacgtggtgaagccc--tgtatgtgttggatataggtgaagctttgggtctgtcacaagctattcagtgggt 116  Q
    ||||| ||||||||||||||| ||| |||| ||||| ||||||  ||| ||||| |||| |||||||||||| |||| ||||||||||||| ||||||||    
T  26622421 atcgcgggaattttgtgaaagtaaggacgatgtggtcaagccccgtgtgtgtgtcggatgtaggtgaagcttagggtttgtcacaagctatccagtgggt 26622520  T
Q  117 tcatgatctacaactcccaaa-gtcgatttcgatttggatgccaagagggttgtagactatttcaacaccggtaacaatgatatctcagaatttggagtc 215  Q
    |||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  26622521 tcatgagctacaactcccaaatgtcgatttcgagttggaagccaagagagttgtagaccatttcaacataggtaacaatgatatctcagaatttggagtc 26622620  T
Q  216 attattgatgattgtagaaagcggtgtaattcttattttggaaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcataatttagctc 315  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  26622621 attattgatgattgtaggaagcggtgtaattcttattttagaaactctaaggtagagttttgtaggagacaagcgaatgaagtcgcttataatttagctc 26622720  T
Q  316 gagaggctacattct 330  Q
    |||||||||||||||    
T  26622721 gagaggctacattct 26622735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 11116161 - 11116216
Alignment:
Q  249 tattttggaaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctca 304  Q
    ||||||| ||||||||||||||||||| || |||||||||| || || ||||||||    
T  11116161 tattttgcaaactctaaggtagagtttagtcggagacaagcgaacgaggtcgctca 11116216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 7175875 - 7176191
Alignment:
Q  13 gagacgatcgctggaattttgtgaaagcaagaacgacgtggtgaagccctgtatgtgttggatataggtgaagctttgggtctgtcacaagctattcagt 112  Q
    |||| |||||| ||||||||||||||||||| |||| ||||| ||| || || | ||| |||||||||||||||||||| ||||||||||||||| ||||    
T  7175875 gagatgatcgcgggaattttgtgaaagcaaggacgatgtggtcaagacccgtgtttgtcggatataggtgaagctttgg-tctgtcacaagctatccagt 7175973  T
Q  113 gggttcatgatctacaactcccaaa-gtcgatttcgatttggatgccaagagggttgtagactatttcaacaccggtaacaatgatatctcagaatttgg 211  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||| |||||| |||||||||||||| ||||| |||||| |||||||||||||||||||    
T  7175974 gggttcatgatctacaactcccaaatgtcaatttcgagttggatgtcaagagagttgtagactattt-aacacgggtaacgatgatatctcagaatttgg 7176072  T
Q  212 agtcattattgatgattgtagaaagcggtgtaattcttattttggaaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcataattta 311  Q
    ||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  7176073 agtcattattgatgattgtaggaagtggtgtaattcttattttgaaaattctaaggttgagttttgtaggagacaagcgaatgaagtcgctcataattta 7176172  T
Q  312 gctcgagaggctacattct 330  Q
    |||||||||||||||||||    
T  7176173 gctcgagaggctacattct 7176191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 322
Target Start/End: Original strand, 25938861 - 25939102
Alignment:
Q  82 gaagctttgggtctgtcacaagctattcagtgggttcatgatctacaactcccaaa-gtcgatttcgatttggatgccaagagggttgtagactatttca 180  Q
    |||||| |||| || ||||| ||||| || ||||| ||||| |||| |||  |||| || ||||| || |||||||||||||  |||||||| ||||| |    
T  25938861 gaagctatgggactctcacatgctatccaatgggtacatgaactactactaacaaatgtggattttgaattggatgccaagaaagttgtagattatttta 25938960  T
Q  181 acaccggtaacaatgatatctcagaatttggagtcattattgatgattgtagaaagcggtgtaattcttattttggaaactctaaggtagagttttgtag 280  Q
    | |  || |||||||||||  | || |||||||  ||  | || || |||||||   | ||||||  ||| |||| ||||||||||||||||||| || |    
T  25938961 atagaggaaacaatgatataaccgagtttggagcaatagtggaggagtgtagaagaagttgtaatctttactttgaaaactctaaggtagagtttagtcg 25939060  T
Q  281 gagacaagcaaatgaagtcgctcataatttagctcgagaggc 322  Q
    ||||||||| ||||| |||||||| | |||||||||||||||    
T  25939061 gagacaagcgaatgaggtcgctcacactttagctcgagaggc 25939102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 30273746 - 30273697
Alignment:
Q  257 aaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcata 306  Q
    |||| ||||||| |||||| || |||||||||| ||||||||||||||||    
T  30273746 aaacactaaggtggagtttagtcggagacaagcgaatgaagtcgctcata 30273697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 82 - 330
Target Start/End: Original strand, 36877613 - 36877863
Alignment:
Q  82 gaagctttgggtctgtcacaagctattcagtgggttcatgatctacaactcccaaa-gtcgatttcgatttggatgccaagagggttgtagactatttca 180  Q
    ||||||||||||||||||||||||||  | ||||||| |||||||||||||||||| ||| |||| || ||||||| ||||||| |||||||||||||||    
T  36877613 gaagctttgggtctgtcacaagctatctaatgggttcctgatctacaactcccaaatgtcaattttgagttggatgtcaagaggattgtagactatttca 36877712  T
Q  181 acaccgg-taacaatgatatctcagaatttggagtcattattgatgattgtagaaagcggtgtaattcttattttggaaactctaaggtagagttttgta 279  Q
    |||| || |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36877713 acacggggtaacaatggtatctcataatttggagtcattattgatgattgtaggaagcggtgtaattcttattttggaaactctaaggtagagttttgta 36877812  T
Q  280 ggagacaagcaaatgaagtcgctcataatttagctcgagaggctacattct 330  Q
    |||||||| | || ||||| | |||||||||||||| ||||||||||||||    
T  36877813 ggagacaaacgaacgaagttgttcataatttagctcaagaggctacattct 36877863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 289
Target Start/End: Complemental strand, 20463824 - 20463609
Alignment:
Q  75 tataggtgaagctttgggtctgtcacaagctattcagtgggttcatgatctacaactc-ccaaagtcgatttcgatttggatgccaagagggttgtagac 173  Q
    ||||||||||||||||||||||||| | ||||| |||||||| ||||| || |||||| | || || ||||| ||  ||||||||||  ||||||||||     
T  20463824 tataggtgaagctttgggtctgtcatatgctatccagtgggtacatgagctgcaactcactaatgttgattttgagatggatgccaaacgggttgtagat 20463725  T
Q  174 tatttcaacaccggtaacaatgatatctcagaatttggagtcattattgatgattgtagaaagcggtgtaattcttattttggaaactctaaggtagagt 273  Q
    |||| ||  |  || | ||||||||| || ||||||||    || ||||| |||||||||   ||||||  |||||  |||| |||||||||||| ||||    
T  20463724 tattacattaaaggaagcaatgatatatctgaatttggcacaatcattgaggattgtagacgtcggtgttgttcttggtttgaaaactctaaggttgagt 20463625  T
Q  274 tttgtaggagacaagc 289  Q
    ||  ||||||||||||    
T  20463624 ttaataggagacaagc 20463609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 306
Target Start/End: Complemental strand, 11524335 - 11524103
Alignment:
Q  75 tataggtgaagctttgggtctgtcacaagctattcagtgggttcatgatctacaactc-ccaaagtcgatttcgatttggatgccaagagggttgtagac 173  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||| || |||||| | || |||||||| ||  ||||||||||  ||| ||||||     
T  11524335 tataggtgaagctttgggtctgtcatatgctattcagtgggtacatgagctgcaactcactaatgtcgattttgagatggatgccaaacgggctgtagat 11524236  T
Q  174 tatttcaacaccggtaacaatgatatctcagaatttggagtcattattgatgattgtagaaagcggtgtaattcttattttggaaactctaaggtagagt 273  Q
    |||| ||  |  || | ||||||||| || |||||||| |  || |||||||||||||||   || |||  |||||  |||| |||||||||| | ||||    
T  11524235 tattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgatgattgtagacgtcgatgttgttcttggtttgaaaactctaagattgagt 11524136  T
Q  274 tttgtaggagacaagcaaatgaagtcgctcata 306  Q
    ||  |||||||||||| |||  |||||||||||    
T  11524135 ttaataggagacaagcgaatatagtcgctcata 11524103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 40492432 - 40492508
Alignment:
Q  247 cttattttggaaactctaa-ggtagagttttgtaggagacaagcaaatgaagtcgctcataatttagctcgagaggc 322  Q
    ||||||||| ||||||||| |||||||||| || |||||||||| ||||| |||||||| |  || |||||||||||    
T  40492432 cttattttgtaaactctaaaggtagagtttagtcggagacaagcgaatgaggtcgctcacacatttgctcgagaggc 40492508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 13221825 - 13221884
Alignment:
Q  247 cttattttggaaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcata 306  Q
    ||||||||| ||||||||||||||||||| ||  ||||||||||| ||| || |||||||    
T  13221825 cttattttgaaaactctaaggtagagtttagtcagagacaagcaactgaggttgctcata 13221884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 5595191 - 5595135
Alignment:
Q  257 aaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcataatttagc 313  Q
    |||||||||||| |||||| ||||| ||||||||||||| || ||||| | ||||||    
T  5595191 aaactctaaggtcgagtttagtaggcgacaagcaaatgaggtagctcacactttagc 5595135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 3158491 - 3158417
Alignment:
Q  248 ttattttggaaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcataatttagctcgagaggc 322  Q
    |||||||| ||||||||||||||||||| || |||||||||| | ||||||| |||||| | | |||||||||||    
T  3158491 ttattttgaaaactctaaggtagagtttagtcggagacaagcgagtgaagtcactcatactcttgctcgagaggc 3158417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 3215060 - 3215109
Alignment:
Q  257 aaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcata 306  Q
    |||||||||||| |||||  ||||||||||||| ||||| ||||||||||    
T  3215060 aaactctaaggtggagttcagtaggagacaagcgaatgaggtcgctcata 3215109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 30092042 - 30091970
Alignment:
Q  249 tattttggaaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcataatttagctcgagagg 321  Q
    ||||||| |||| |||||||||||||| || |||||||| | || || |||||||| | | ||||||||||||    
T  30092042 tattttgaaaacactaaggtagagtttagtcggagacaatcgaaggaggtcgctcacactctagctcgagagg 30091970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 233
Target Start/End: Original strand, 34673595 - 34673754
Alignment:
Q  75 tataggtgaagctttgggtctgtcacaagctattcagtgggttcatgatctacaactc-ccaaagtcgatttcgatttggatgccaagagggttgtagac 173  Q
    |||||||||||||||||| |||||| | ||||| || ||||| ||||| || |||||| | || |||||||| ||  ||||||||||  ||||||||||     
T  34673595 tataggtgaagctttgggcctgtcatatgctatccaatgggtacatgagctgcaactcactaacgtcgattttgagatggatgccaaacgggttgtagat 34673694  T
Q  174 tatttcaacaccggtaacaatgatatctcagaatttggagtcattattgatgattgtaga 233  Q
    |||| ||  |  || | ||||||||| || |||||||| |  || |||||||||||||||    
T  34673695 tattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgatgattgtaga 34673754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 5477418 - 5477353
Alignment:
Q  241 gtaattcttattttggaaactctaaggtagagttttgtaggagacaagcaaatgaagtcgctcata 306  Q
    ||||| ||| ||||| |||||||||||| |||||| || |||||||||| ||||| ||| ||||||    
T  5477418 gtaatgctttttttgaaaactctaaggtggagtttagtcggagacaagcgaatgaggtcactcata 5477353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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