View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_high_14 (Length: 301)
Name: NF9223_high_14
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 28866177 - 28865904
Alignment:
| Q |
10 |
ataatacttcgtaatctataaactcaaaatctacttgaagtgatatctagacatataaaacatcgacnnnnnnnnnnncatacgaagaaactctacaaac |
109 |
Q |
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| T |
28866177 |
ataatactttgtaatttataaattcaaaatctacttgaagtgatatctagacatataaaccatcgacaaaaaaaaaaacatatgaagaaactctacaaac |
28866078 |
T |
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| Q |
110 |
ccagtttagttagggatgacaatcgataagatactataatatacattctcaaacccactgtttgaaaaaatagttataaccttgtggatagtcaattcaa |
209 |
Q |
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|| |||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28866077 |
ccggtttggttagggataacaatggataagatactataatacacattctcaaacccacagtttgaaaaaatagttataaccttgtggatagtcaattcaa |
28865978 |
T |
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| Q |
210 |
tacgtgtatctatacccattgaatgcataagcacttgtaccgtatttgtattttttcaggggacccgtactcgt |
283 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28865977 |
tacgtgtatctatacccattgaatacataagcactcgtaccgtatttgtattttttcaggggacccgtactcgt |
28865904 |
T |
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