View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_1 (Length: 1069)
Name: NF9223_low_1
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 660; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 45009332 - 45008648
Alignment:
| Q |
1 |
gcattacagttgcatggtggacctgtatggaagagcagggagatttgatgaagcagaaaatttaatcaagaatatgccatttgagcctgatgttgtgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45009332 |
gcattacagttgcatggtggacctgtatggaagagcagggagatttgatgaagcagaaaatttaatcaagaatatgccatttgagcctgatgttgtgttg |
45009233 |
T |
|
| Q |
101 |
tggggagcattacttgcagcttgtggcctgcattcaaatttggaacttggagagtatgctgctgagaggattcgcagattggagagcagtcatcctgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45009232 |
tggggagcattacttgcagcttgtggcctgcattcaaatttggaacttggagagtatgctgctgagaggattcgcagattggagagcagtcatcctgttt |
45009133 |
T |
|
| Q |
201 |
cttactcggtactttcaaaaatccaaggtgagaaaggagtatggagcagtgtaaatgaattgagggacacaatgaaggagcgaggaatnnnnnnncagac |
300 |
Q |
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| T |
45009132 |
cttactcggtactttcaaaaatccaaggtgagaaaggagtatggagcagtgtaaatgaattgagggacacaatgaaggagcgaggaataaaaaaacagac |
45009033 |
T |
|
| Q |
301 |
ggcaattagttgggttgagtgatctccgtctctctgtaagttcagcctggtgataaaaactgtgcgcaattcagcaaactggattcaattaagacaaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45009032 |
ggcaattagttgggttgagtgatctccgtctctctgtaagttcagcctggtgataaaaactgtgcgcaattcagcaaactggattcaattaagacaaaaa |
45008933 |
T |
|
| Q |
401 |
tagaatttattctgattgcttcaaatccttttaaaaattctcccctgcatggtaatggttatatcaaagcctacatgtgtaaagcaactgaaaatcgtgt |
500 |
Q |
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| T |
45008932 |
tagaatttattctgattgcttcaaatccttttaaaaattctcccctgcatggtaatgattatatcaaagcctacatgtgtaaagcaactgaaaatcgtgt |
45008833 |
T |
|
| Q |
501 |
ttatatgcaattactgacaaagccaacagagaaatgatacagggtaatcttttcctttcatatatctggacatatatagatggaattttagaagttgttg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45008832 |
ttatatgcaattactgacaaagccaacagagaaatgatacagggtaatcttttcctttcatatatctggacatatatagatggaattttagaagttgttg |
45008733 |
T |
|
| Q |
601 |
ctacttcatttgttttaagctataacttcttacttggacccttgccttgtttcccaatgaagttaaatcaatcaataattgtaag |
685 |
Q |
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| T |
45008732 |
ctacttcatttgttttaagctataacttcttacttggacccttgccttgtttcccaatgaagttaaatcaatcaataattgtaag |
45008648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-155
Query Start/End: Original strand, 740 - 1051
Target Start/End: Complemental strand, 45008593 - 45008286
Alignment:
| Q |
740 |
aaggggcttcaatcatgtatgtaatataccagttgtgacttgtgcaagtattattggatactggtcatgatgtttgtttttccaagtttaatgtatggtc |
839 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45008593 |
aaggggcttcaatcatgta----atataccagttgtgacttgtgcaagtattattggatactggtcatgatgtttgtttttccaagtttaatgtatggtc |
45008498 |
T |
|
| Q |
840 |
ttgttattttttagcaacaaataacttggttggatttaacagattctagaaggagtacgactcagctagtttgttatgaattctgttgcactgttatttg |
939 |
Q |
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| T |
45008497 |
ttgttatgttttagcaacaaataacttggttggatttaacagattctagaaggagtacgactcagctagtttgttatgaattctgttgcactgttatttg |
45008398 |
T |
|
| Q |
940 |
gcatatattatttagtaaggctagctgctacatatgccttgtatggtgactccatgaatatcaaagagaatttagtctctcgtcttctctatctaatttc |
1039 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45008397 |
gcataaattatttagtaaggctagctgctacatatgccttatatggtgactccatgaatatcaaagagaatttagtctctcgtcttttctatctaatttc |
45008298 |
T |
|
| Q |
1040 |
tcagaaggccct |
1051 |
Q |
| |
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|||||||||||| |
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| T |
45008297 |
tcagaaggccct |
45008286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 45006203 - 45006107
Alignment:
| Q |
68 |
aagaatatgccatttgagcctgatgttgtgttgtggggagcattacttgcagcttgtggcctgcattcaaatttggaacttggagagtatgctgctg |
164 |
Q |
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||||| ||| ||||||||||||| ||| ||| |||| ||||||||| || ||||||| ||||||||||||||| ||||||||||||| ||||||| |
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| T |
45006203 |
aagaacatgtcatttgagcctgacgttccgttatgggatgcattactttcaacttgtggtctgcattcaaatttgaaacttggagagtaagctgctg |
45006107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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