View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_13 (Length: 384)
Name: NF9223_low_13
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 32547910 - 32547557
Alignment:
| Q |
13 |
cagagagttttcaaactaggaaatgatgatgcttcactttcatcctttatatttgcatcaacaaacaagttgttgtgtccaagatcaagtgtggttaaat |
112 |
Q |
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| T |
32547910 |
cagagagttttcaaactaggaaatgatgatgcttcacttccatcctttatatttgcatcaacaaacaagttgttgtgtccaagatcaagtgtggttaaat |
32547811 |
T |
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| Q |
113 |
tttgaagcttaccgaagacatcaagttgtatagtaccattgaacttgtttttggtaagttgaagcaaacgaagtcttttgagtttgaaggtagacatagg |
212 |
Q |
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| T |
32547810 |
tttgaagcttaccaaagacatcaagttgtatagtaccattgaacttgtttttggtaagttgaagcaaacgaagtcttttgagtttgaaggtagacatagg |
32547711 |
T |
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| Q |
213 |
aatagacccttcaaaattgtttccgcttaaatcaagcatctctaataatgacatagaagcattaggaaattcttctaacaccccttcaaatttgttgtaa |
312 |
Q |
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| T |
32547710 |
aatagacccttcaaaattgtttccacttaaatcaagcatctctaataatgacatagaagcattaggaaattcttctaacaccccttcaaatttgttgtaa |
32547611 |
T |
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| Q |
313 |
taaagcatgagttgttggagagattgaagtctaaacaatgatgaagggactctt |
366 |
Q |
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| T |
32547610 |
taaagcatgagttgttgaagagattgaagtctaaacaatgttgaagggactctt |
32547557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 65 - 349
Target Start/End: Complemental strand, 14558483 - 14558198
Alignment:
| Q |
65 |
ttgcatcaacaaacaagttgttgtgtccaagatcaagtgtggttaaattttgaagcttaccgaagacatcaagttgtatagtaccattgaacttgttttt |
164 |
Q |
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| T |
14558483 |
ttgcatcaacaaacaagttgttatgtgcaagatcaagtgtacccaaattttgtagccttccaatcacatcaaactgtattgtaacattgaacttgtttta |
14558384 |
T |
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| Q |
165 |
ggtaagttgaagcaaacgaagtcttttgagtttgaaggtagacataggaatagacccttcaaaattgtttccgcttaaatcaagcatctctaataatgac |
264 |
Q |
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|| ||||||||||||| | |||||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||| |||||||||| ||||| |
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| T |
14558383 |
ggaaagttgaagcaaaaggagtcttttgagtttgaagatagacataggaataggcccttcaaaattgttgccacttaaatcaaccatctctaatgatgac |
14558284 |
T |
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| Q |
265 |
-atagaagcattaggaaattcttctaacaccccttcaaatttgttgtaataaagcatgagttgttggagagattgaagtctaaaca |
349 |
Q |
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| T |
14558283 |
taaagaagcatttggaatttcttccaaattaatatcaaatttgttgtaatagagcatgagtatttgaatagattgaagtgtaaaca |
14558198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 27033972 - 27033903
Alignment:
| Q |
250 |
atctctaataatgacatagaagcattaggaaattcttctaacaccccttcaaatttgttgtaataaagca |
319 |
Q |
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|||||| ||||||||| ||||||||| |||| ||||||||| | || |||||| ||||||||||||||| |
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| T |
27033972 |
atctctgataatgacaaagaagcatttggaatttcttctaatataccatcaaatatgttgtaataaagca |
27033903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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