View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9223_low_18 (Length: 371)

Name: NF9223_low_18
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9223_low_18
NF9223_low_18
[»] chr8 (39 HSPs)
chr8 (1-355)||(29262704-29263058)
chr8 (68-130)||(1470911-1470973)
chr8 (68-157)||(4558751-4558840)
chr8 (87-202)||(11415126-11415241)
chr8 (1-122)||(7026614-7026738)
chr8 (80-201)||(6509287-6509408)
chr8 (80-189)||(12361157-12361266)
chr8 (84-195)||(29973050-29973162)
chr8 (80-148)||(34770857-34770925)
chr8 (5-109)||(34563137-34563244)
chr8 (80-130)||(35374428-35374478)
chr8 (68-117)||(25867039-25867088)
chr8 (164-201)||(30987975-30988012)
chr8 (84-124)||(7878547-7878587)
chr8 (74-201)||(26473736-26473864)
chr8 (68-112)||(27728094-27728138)
chr8 (68-188)||(28784793-28784912)
chr8 (80-199)||(31705049-31705169)
chr8 (161-201)||(31875579-31875619)
chr8 (161-201)||(43368684-43368724)
chr8 (66-113)||(2100756-2100803)
chr8 (73-204)||(39551190-39551321)
chr8 (43-111)||(41620365-41620434)
chr8 (80-130)||(787161-787211)
chr8 (80-130)||(38874611-38874661)
chr8 (81-195)||(42215296-42215410)
chr8 (80-201)||(4510993-4511114)
chr8 (85-178)||(8062494-8062587)
chr8 (80-197)||(31862458-31862575)
chr8 (172-201)||(40071806-40071835)
chr8 (1-120)||(42508628-42508750)
chr8 (68-117)||(44348440-44348489)
chr8 (68-140)||(2093232-2093304)
chr8 (117-201)||(8060671-8060755)
chr8 (43-112)||(11494080-11494150)
chr8 (68-112)||(13561385-13561429)
chr8 (65-105)||(33714315-33714355)
chr8 (162-202)||(37740410-37740449)
chr8 (67-115)||(42237492-42237540)
[»] chr6 (55 HSPs)
chr6 (1-204)||(27693420-27693623)
chr6 (1-204)||(27595548-27595751)
chr6 (1-204)||(27615254-27615457)
chr6 (71-199)||(281834-281962)
chr6 (82-201)||(30523627-30523745)
chr6 (199-276)||(27614019-27614099)
chr6 (211-284)||(27726029-27726105)
chr6 (218-284)||(27594504-27594573)
chr6 (14-93)||(27727165-27727246)
chr6 (43-113)||(3217262-3217333)
chr6 (68-113)||(10749300-10749345)
chr6 (43-130)||(5550059-5550147)
chr6 (68-195)||(4006667-4006794)
chr6 (68-202)||(1402949-1403083)
chr6 (1-60)||(14340929-14340990)
chr6 (80-130)||(24838798-24838848)
chr6 (80-130)||(29274284-29274334)
chr6 (162-198)||(740873-740909)
chr6 (83-115)||(2732309-2732341)
chr6 (87-199)||(6647359-6647471)
chr6 (161-201)||(20368164-20368204)
chr6 (82-122)||(22742333-22742373)
chr6 (67-119)||(29940748-29940800)
chr6 (80-123)||(2027468-2027511)
chr6 (142-201)||(2455837-2455896)
chr6 (1-102)||(2785750-2785855)
chr6 (80-115)||(7713990-7714025)
chr6 (162-201)||(8010404-8010443)
chr6 (142-197)||(9667973-9668028)
chr6 (44-130)||(11340680-11340767)
chr6 (80-115)||(27713472-27713507)
chr6 (84-195)||(30522430-30522541)
chr6 (69-115)||(3204612-3204658)
chr6 (80-130)||(9093611-9093661)
chr6 (164-201)||(1575944-1575981)
chr6 (169-202)||(5730731-5730764)
chr6 (136-201)||(7931710-7931775)
chr6 (68-113)||(9027530-9027575)
chr6 (80-149)||(14492267-14492336)
chr6 (86-191)||(25100014-25100119)
chr6 (200-244)||(27533116-27533161)
chr6 (200-244)||(27692379-27692424)
chr6 (200-244)||(27707135-27707180)
chr6 (68-105)||(29269849-29269886)
chr6 (164-201)||(32917246-32917283)
chr6 (161-201)||(769184-769224)
chr6 (83-115)||(1904783-1904815)
chr6 (83-115)||(1909016-1909048)
chr6 (68-120)||(2514655-2514707)
chr6 (70-130)||(2735024-2735084)
chr6 (161-197)||(7148712-7148748)
chr6 (68-120)||(10452425-10452477)
chr6 (68-112)||(24836272-24836316)
chr6 (161-201)||(31624136-31624176)
chr6 (80-128)||(31671131-31671179)
[»] chr3 (44 HSPs)
chr3 (68-199)||(10357386-10357517)
chr3 (80-198)||(2201093-2201211)
chr3 (80-201)||(36646366-36646487)
chr3 (68-115)||(1395624-1395671)
chr3 (66-110)||(25195375-25195419)
chr3 (68-195)||(237350-237476)
chr3 (142-201)||(29427629-29427688)
chr3 (102-196)||(3044248-3044342)
chr3 (68-130)||(23952161-23952223)
chr3 (80-130)||(32555036-32555086)
chr3 (58-131)||(48397590-48397662)
chr3 (136-201)||(49465920-49465985)
chr3 (68-200)||(24887269-24887400)
chr3 (44-115)||(49586986-49587057)
chr3 (80-199)||(10132704-10132823)
chr3 (68-111)||(26990687-26990730)
chr3 (68-115)||(32703091-32703138)
chr3 (86-201)||(41452494-41452609)
chr3 (162-201)||(50004699-50004738)
chr3 (72-130)||(21872326-21872384)
chr3 (80-130)||(27792837-27792887)
chr3 (141-195)||(38318986-38319040)
chr3 (162-204)||(42745085-42745127)
chr3 (161-202)||(2152161-2152202)
chr3 (140-201)||(10073200-10073261)
chr3 (68-113)||(10101548-10101593)
chr3 (68-113)||(10212473-10212518)
chr3 (55-112)||(20143866-20143921)
chr3 (85-130)||(21367824-21367869)
chr3 (55-112)||(23269268-23269323)
chr3 (80-201)||(27290885-27291006)
chr3 (152-201)||(37273171-37273220)
chr3 (162-207)||(41724259-41724304)
chr3 (68-117)||(42808932-42808981)
chr3 (68-117)||(42809254-42809303)
chr3 (162-195)||(52619050-52619083)
chr3 (68-113)||(53736185-53736230)
chr3 (161-201)||(5391925-5391965)
chr3 (68-112)||(15304420-15304464)
chr3 (169-201)||(21574544-21574576)
chr3 (80-120)||(23315591-23315631)
chr3 (136-200)||(30923883-30923947)
chr3 (4-130)||(38462167-38462296)
chr3 (68-112)||(54965459-54965503)
[»] scaffold0349 (3 HSPs)
scaffold0349 (200-284)||(4607-4693)
scaffold0349 (14-93)||(5744-5825)
scaffold0349 (80-115)||(18437-18472)
[»] chr2 (42 HSPs)
chr2 (80-193)||(33942115-33942228)
chr2 (68-201)||(1742016-1742149)
chr2 (46-194)||(1939323-1939470)
chr2 (80-197)||(43141836-43141953)
chr2 (68-202)||(9478252-9478386)
chr2 (80-202)||(22681168-22681290)
chr2 (164-201)||(4550796-4550833)
chr2 (68-201)||(9878666-9878799)
chr2 (37-115)||(17952771-17952850)
chr2 (82-208)||(15377732-15377859)
chr2 (80-202)||(18179223-18179346)
chr2 (68-130)||(656832-656894)
chr2 (80-130)||(11513863-11513913)
chr2 (83-132)||(1160798-1160846)
chr2 (80-201)||(28933789-28933909)
chr2 (78-195)||(29316765-29316882)
chr2 (82-115)||(43173189-43173222)
chr2 (162-202)||(2226983-2227023)
chr2 (80-112)||(3423841-3423873)
chr2 (82-130)||(8017401-8017449)
chr2 (86-201)||(18066099-18066215)
chr2 (68-120)||(25609749-25609801)
chr2 (80-120)||(31740024-31740064)
chr2 (136-204)||(43529839-43529907)
chr2 (67-106)||(6988067-6988106)
chr2 (72-115)||(20059099-20059142)
chr2 (43-115)||(28803576-28803649)
chr2 (142-201)||(34652020-34652079)
chr2 (63-117)||(3458606-3458659)
chr2 (68-189)||(37053547-37053669)
chr2 (142-204)||(41042003-41042065)
chr2 (43-113)||(3673734-3673805)
chr2 (164-201)||(15120232-15120269)
chr2 (68-113)||(33192146-33192191)
chr2 (83-132)||(33944573-33944622)
chr2 (80-113)||(34339871-34339904)
chr2 (67-131)||(9395082-9395146)
chr2 (80-112)||(10646362-10646394)
chr2 (161-201)||(11344754-11344794)
chr2 (90-130)||(29643471-29643511)
chr2 (162-202)||(32821856-32821896)
chr2 (80-192)||(35485882-35485994)
[»] chr1 (51 HSPs)
chr1 (68-201)||(15437916-15438049)
chr1 (78-130)||(15361676-15361728)
chr1 (68-195)||(7218064-7218191)
chr1 (68-130)||(49517023-49517085)
chr1 (68-117)||(1879095-1879144)
chr1 (43-189)||(17269177-17269324)
chr1 (68-109)||(45234150-45234191)
chr1 (67-130)||(25006089-25006152)
chr1 (80-115)||(28467377-28467412)
chr1 (142-201)||(35925717-35925776)
chr1 (152-194)||(6262057-6262099)
chr1 (161-195)||(23445380-23445414)
chr1 (65-115)||(27738250-27738300)
chr1 (80-130)||(33204443-33204493)
chr1 (68-186)||(44031998-44032116)
chr1 (80-130)||(48830131-48830181)
chr1 (37-115)||(4200150-4200229)
chr1 (142-199)||(6976952-6977008)
chr1 (83-123)||(9656618-9656658)
chr1 (68-120)||(15360847-15360899)
chr1 (80-188)||(25479546-25479654)
chr1 (43-123)||(7274001-7274082)
chr1 (80-115)||(10439651-10439686)
chr1 (162-201)||(17628646-17628685)
chr1 (72-188)||(35017531-35017649)
chr1 (162-201)||(43338163-43338202)
chr1 (68-115)||(44936660-44936707)
chr1 (68-201)||(4549525-4549659)
chr1 (80-202)||(15515506-15515628)
chr1 (170-204)||(15942728-15942762)
chr1 (167-201)||(17631086-17631120)
chr1 (68-130)||(29007771-29007833)
chr1 (80-130)||(30371113-30371163)
chr1 (67-113)||(30815707-30815753)
chr1 (42-115)||(45204994-45205068)
chr1 (162-195)||(3070080-3070113)
chr1 (3-115)||(4363702-4363815)
chr1 (164-201)||(4699599-4699636)
chr1 (80-189)||(10199404-10199513)
chr1 (68-109)||(14737781-14737822)
chr1 (169-202)||(19412580-19412613)
chr1 (68-109)||(26184704-26184745)
chr1 (104-201)||(37811841-37811938)
chr1 (3-130)||(49557026-49557156)
chr1 (68-112)||(17628552-17628596)
chr1 (165-201)||(30418166-30418202)
chr1 (70-130)||(34179927-34179987)
chr1 (81-113)||(43371957-43371989)
chr1 (68-112)||(45804230-45804274)
chr1 (80-120)||(45990123-45990163)
chr1 (80-116)||(47498905-47498941)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-130)||(27459-27591)
[»] chr7 (44 HSPs)
chr7 (45-146)||(28340883-28340985)
chr7 (80-202)||(38010679-38010801)
chr7 (68-117)||(27121654-27121703)
chr7 (68-201)||(28165044-28165177)
chr7 (1-126)||(12834996-12835124)
chr7 (80-123)||(31002726-31002769)
chr7 (80-123)||(40689048-40689091)
chr7 (68-122)||(35536060-35536114)
chr7 (72-201)||(3500951-3501079)
chr7 (1-107)||(22387979-22388091)
chr7 (148-201)||(29290366-29290419)
chr7 (80-129)||(30134014-30134063)
chr7 (68-113)||(39591539-39591584)
chr7 (69-114)||(46825052-46825097)
chr7 (68-201)||(48157104-48157237)
chr7 (68-120)||(49060493-49060545)
chr7 (45-112)||(3802212-3802278)
chr7 (80-115)||(23918922-23918957)
chr7 (162-201)||(36598340-36598379)
chr7 (80-123)||(39908056-39908099)
chr7 (142-201)||(44615088-44615147)
chr7 (80-114)||(1417229-1417263)
chr7 (80-198)||(3468579-3468697)
chr7 (80-130)||(12110325-12110375)
chr7 (80-130)||(22759151-22759201)
chr7 (80-130)||(27548228-27548278)
chr7 (171-201)||(36537964-36537994)
chr7 (162-195)||(11048074-11048107)
chr7 (164-201)||(15740395-15740432)
chr7 (68-117)||(18749878-18749927)
chr7 (1-62)||(22388547-22388611)
chr7 (89-130)||(24909638-24909679)
chr7 (80-113)||(30456522-30456555)
chr7 (83-124)||(40428523-40428564)
chr7 (82-115)||(47046178-47046211)
chr7 (68-104)||(5269483-5269519)
chr7 (162-202)||(9423577-9423617)
chr7 (137-201)||(12234873-12234937)
chr7 (89-129)||(24895330-24895370)
chr7 (83-111)||(30751485-30751513)
chr7 (162-202)||(39539764-39539804)
chr7 (68-116)||(43318597-43318645)
chr7 (161-201)||(44686976-44687016)
chr7 (162-198)||(48496864-48496900)
[»] chr4 (40 HSPs)
chr4 (68-120)||(4071835-4071887)
chr4 (80-195)||(6466036-6466151)
chr4 (68-130)||(8130127-8130189)
chr4 (74-192)||(11264260-11264378)
chr4 (84-206)||(20936208-20936330)
chr4 (68-130)||(49219092-49219154)
chr4 (68-201)||(1137665-1137798)
chr4 (80-201)||(2996538-2996659)
chr4 (9-112)||(36734784-36734890)
chr4 (86-201)||(53315297-53315412)
chr4 (67-130)||(53626728-53626791)
chr4 (136-201)||(6987725-6987790)
chr4 (40-109)||(7022592-7022662)
chr4 (80-112)||(11917524-11917556)
chr4 (80-120)||(13949909-13949949)
chr4 (86-130)||(24091434-24091478)
chr4 (80-188)||(54325034-54325142)
chr4 (83-115)||(55437356-55437388)
chr4 (79-186)||(7694009-7694116)
chr4 (68-115)||(20936072-20936119)
chr4 (68-115)||(30024653-30024700)
chr4 (80-119)||(32724084-32724123)
chr4 (163-201)||(2874608-2874646)
chr4 (70-112)||(5219573-5219615)
chr4 (84-122)||(21952930-21952968)
chr4 (67-201)||(22666710-22666844)
chr4 (169-207)||(27623668-27623706)
chr4 (68-150)||(35958608-35958690)
chr4 (164-201)||(1965990-1966027)
chr4 (84-117)||(22684584-22684617)
chr4 (152-201)||(27725251-27725300)
chr4 (136-189)||(29467620-29467673)
chr4 (37-187)||(30207569-30207719)
chr4 (68-113)||(31038939-31038984)
chr4 (80-117)||(41701509-41701546)
chr4 (80-201)||(44319914-44320035)
chr4 (47-109)||(52294042-52294106)
chr4 (80-113)||(52735087-52735120)
chr4 (80-120)||(27623600-27623640)
chr4 (161-201)||(41097240-41097280)
[»] scaffold0153 (2 HSPs)
scaffold0153 (83-203)||(6476-6600)
scaffold0153 (83-203)||(13496-13620)
[»] chr5 (33 HSPs)
chr5 (80-201)||(32172618-32172739)
chr5 (105-202)||(36542265-36542362)
chr5 (68-128)||(14295459-14295519)
chr5 (68-120)||(35135727-35135779)
chr5 (74-201)||(10272415-10272542)
chr5 (68-115)||(32969187-32969234)
chr5 (80-130)||(32059644-32059694)
chr5 (68-130)||(35960367-35960428)
chr5 (68-130)||(37063129-37063191)
chr5 (80-197)||(15003502-15003619)
chr5 (68-201)||(28586750-28586883)
chr5 (82-201)||(34205206-34205327)
chr5 (72-120)||(583838-583886)
chr5 (162-202)||(11700361-11700401)
chr5 (80-115)||(8158371-8158406)
chr5 (83-134)||(36796757-36796808)
chr5 (142-201)||(37611199-37611258)
chr5 (142-201)||(37787929-37787988)
chr5 (80-111)||(38047929-38047960)
chr5 (80-130)||(9202803-9202853)
chr5 (68-130)||(12595795-12595857)
chr5 (80-129)||(12425536-12425585)
chr5 (58-115)||(29117000-29117056)
chr5 (102-187)||(36638734-36638819)
chr5 (68-193)||(37588352-37588477)
chr5 (164-201)||(37794682-37794719)
chr5 (80-113)||(39750108-39750141)
chr5 (68-108)||(10303754-10303794)
chr5 (169-201)||(11457152-11457184)
chr5 (83-123)||(12975315-12975355)
chr5 (43-106)||(17756808-17756872)
chr5 (169-201)||(38047863-38047895)
chr5 (169-201)||(40499710-40499742)
[»] scaffold0085 (1 HSPs)
scaffold0085 (72-110)||(34072-34110)
[»] scaffold0590 (1 HSPs)
scaffold0590 (3-114)||(1145-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (3-114)||(2716-2830)
[»] scaffold0015 (1 HSPs)
scaffold0015 (83-123)||(69005-69045)
[»] scaffold0549 (2 HSPs)
scaffold0549 (44-130)||(1779-1866)
scaffold0549 (44-130)||(3869-3956)


Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 29263058 - 29262704
Alignment:
Q  1 tttggataaacaacttaattaagcttacaacatagacacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29263058 tttggataaacaacttaattaagcttacaacatagacacttctcatataagtgtttatatatgttattttctataatagaagataaaataaagtcaaatt 29262959  T
Q  101 attttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29262958 attttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 29262859  T
Q  201 aattttccttttgtttatctttggttaaaagtaaccaaaatgtaacttgagggtatggagcttcattttgtttatttttgtatgttgatttgttacaaca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29262858 aattttccttttgtttatctttggttaaaagtaaccaaaatgtaacttgatggtatggagcttcattttgtttatttttgtatgttgatttgttacaaca 29262759  T
Q  301 tttaagcttctgttaaacaagttgttcaaaattctaatctttaaaatgtaacttg 355  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29262758 tttaagcttttgttaaacaagttgttcaaaattctaatctttaaaatgtaacttg 29262704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 1470973 - 1470911
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  1470973 tttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcat 1470911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 4558751 - 4558840
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaat 157  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||| || |||  || ||||||||||| ||| ||||||    
T  4558751 tttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttatggaaat 4558840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 11415126 - 11415241
Alignment:
Q  87 aataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcat 186  Q
    ||||||||||||||||||| ||||||| | || |||| ||||||  || ||||||||||||||  | |||| |  ||| ||||||||||| |||||| ||    
T  11415126 aataaagtcaaattatttttatataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttat 11415225  T
Q  187 aagttgtttccataaa 202  Q
    ||| ||||||||||||    
T  11415226 aagctgtttccataaa 11415241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7026614 - 7026738
Alignment:
Q  1 tttggataaacaacttaattaagc--ttacaacatagacacttctcatataagtgcttat--atatgttattttctataatagaagataaaataaagtca 96  Q
    ||||||||||||||||||||||||  ||||| |||| ||| || ||||||||||||||||  ||| | || | | ||||| | ||||||||||||||| |    
T  7026614 tttggataaacaacttaattaagcatttacagcataaacatttatcatataagtgcttatgcataagctactgt-tataacaaaagataaaataaagtaa 7026712  T
Q  97 aattattttcatataagctgtaagct 122  Q
    |||| |||||||||||| | ||||||    
T  7026713 aattgttttcatataaggtataagct 7026738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 6509408 - 6509287
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||||||||||||||| | || ||||||||| ||||||| ||||||  || ||||| ||||| |||  ||||| |  ||||||||| ||||   |    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagcttattgaaataaggtgaaaatagtttataggc 6509309  T
Q  180 atgtcataagttgtttccataa 201  Q
    |||||||||| |||||| ||||    
T  6509308 atgtcataagctgtttctataa 6509287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 12361157 - 12361266
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||||| |||||||||| |||||||||||||| ||||||| ||||||  |  || |  ||||| | | |||||| | ||||||| |||||||| ||    
T  12361157 aagataaaatgaagtcaaattgttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggac 12361256  T
Q  180 atgtcataag 189  Q
    ||||||||||    
T  12361257 atgtcataag 12361266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 29973050 - 29973162
Alignment:
Q  84 taaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa-tagcttatgaacatg 182  Q
    ||||||||||||||| |||||||| ||||||| |||| || ||||||  || ||||| ||||||||| |||||| |  ||||||  ||||| || |||||    
T  29973050 taaaataaagtcaaactattttcacataagctataagttgttttcataagctatccttgagagtttatggaaataaactgaaaaccagcttttggacatg 29973149  T
Q  183 tcataagttgttt 195  Q
    || ||||||||||    
T  29973150 tcgtaagttgttt 29973162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 34770857 - 34770925
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtt 148  Q
    ||||||||||||||||||||| ||||||| |||||| |||| || ||||||  || |||||||||||||    
T  34770857 aagataaaataaagtcaaattgttttcatttaagctataagttgttttcataagctatcctagagagtt 34770925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 34563137 - 34563244
Alignment:
Q  5 gataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaatt 100  Q
    ||||||||||||||||||  ||||| | |||| ||| || ||||||||||||||||||||  |||| ||||||| | | | |||||||||||||||||      
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagtta-tttctatgacaaaggataaaataaagtcaaaca 34563235  T
Q  101 attttcata 109  Q
    |||||||||    
T  34563236 attttcata 34563244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 35374478 - 35374428
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||| ||||| |||||||||||||| ||| ||||||||||    
T  35374478 aagataaaataaagttaaattgttttcatataagctataatctgatttcat 35374428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 25867039 - 25867088
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||| | ||||| ||||||||||||| ||||||||||||||||||    
T  25867039 tttctataacaaaagatgaaataaagtcaaaatattttcatataagctgt 25867088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 30988012 - 30987975
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  30988012 aaaatagcttatggacatgtcataagttgtttccataa 30987975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 7878587 - 7878547
Alignment:
Q  84 taaaataaagtcaaattattttcatataagctgtaagctga 124  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  7878587 taaaataaagtcaaattgttttcatataagctataagctga 7878547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 26473864 - 26473736
Alignment:
Q  74 taatagaagataaaataaagtcaaattatttt-catataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagct 172  Q
    ||||| ||||||||||||| |||| || |||| ||||| || |||||| || ||||||  || ||||||||||| ||| | |||| | || ||| |||||    
T  26473864 taataaaagataaaataaattcaagttgtttttcatatgagttgtaagttgttttcataagctatcctagagagcttatgaaaataagttaaaactagct 26473765  T
Q  173 tatgaacatgtcataagttgtttccataa 201  Q
    |||  |||||||||||| ||||| |||||    
T  26473764 tatagacatgtcataagctgttttcataa 26473736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 27728138 - 27728094
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||    
T  27728138 tttctataaaaaaagataaaataaagtcaaactattttcatataa 27728094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 28784912 - 28784793
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    |||||| |||| ||||||||||||||||||||| |||| |||| || ||||||||  ||||||  || ||| ||||||| ||    |||| |  ||||||    
T  28784912 tttctaaaataaaagataaaataaagtcaaattgttttgatatcagttgtaagctattttcataagctatcttagagagcttgtaaaaataagctgaaaa 28784813  T
Q  168 tagcttatgaacatgtcataa 188  Q
     ||||||||||||||||||||    
T  28784812 -agcttatgaacatgtcataa 28784793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 31705049 - 31705169
Alignment:
Q  80 aagataaaataaagtcaaattat-tttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaa 178  Q
    |||||||||| | |||||||||  ||||||||||||| ||||||| ||||||  ||  |||| ||||||||| |||||| |  |||||| |||||||| |    
T  31705049 aagataaaatcatgtcaaattacgtttcatataagctataagctgttttcataagctgtccttgagagtttatggaaataagctgaaaacagcttatgca 31705148  T
Q  179 catgtcataagttgtttccat 199  Q
    ||| || |||| | |||||||    
T  31705149 catctcttaagctatttccat 31705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 31875619 - 31875579
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  31875619 ttgaaaatggcttatggacatgtcataagttgtttccataa 31875579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 43368724 - 43368684
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  43368724 ttgaaaatagctaatgaacatgtcataagttgttttcataa 43368684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 2100756 - 2100803
Alignment:
Q  66 attttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||||  | ||||||||||||||||||| ||||||||||||||    
T  2100756 attttctatagcaaaagataaaataaagtcaaaatattttcatataag 2100803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 39551321 - 39551190
Alignment:
Q  73 ataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagct 172  Q
    |||||| ||||||||||||||  ||| | | |||||| ||||| |||| || ||||||  ||  |||| ||||| |||   |||| | || |||| ||||    
T  39551321 ataataaaagataaaataaagctaaactgtcttcatacaagctataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagct 39551222  T
Q  173 tatgaacatgtcataagttgtttccataaatt 204  Q
    | || |||||||||||||||||||||||||||    
T  39551221 tttggacatgtcataagttgtttccataaatt 39551190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 41620434 - 41620365
Alignment:
Q  43 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatata 111  Q
    ||||| ||||||||||||||  |||||||| | ||| | ||||||||||||||||||||||| ||||||||    
T  41620434 tcatacaagtgcttatatataagttatttt-tgtaacaaaagataaaataaagtcaaattatgttcatata 41620365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 787211 - 787161
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||||||||| || ||||||||||| ||| ||| ||||||    
T  787211 aagataaaataaagtcaaattgttatcatataagctataaactgttttcat 787161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 38874611 - 38874661
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||  ||||||||| |||||||||||||| ||||||| ||||||    
T  38874611 aagataaaatcgagtcaaattcttttcatataagctctaagctgttttcat 38874661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 42215410 - 42215296
Alignment:
Q  81 agataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaaca 180  Q
    |||||||||||||||||| | ||||  ||||| || ||| ||  |||||| ||| ||||| ||||| ||| | |||| |  |||||| ||||||||||||    
T  42215410 agataaaataaagtcaaactgtttttgtataatctataacctattttcatatgctatcctggagagcttatgtaaataagctgaaaacagcttatgaaca 42215311  T
Q  181 tgtcataagttgttt 195  Q
     |||||||| |||||    
T  42215310 agtcataagctgttt 42215296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 4510993 - 4511114
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||| ||| ||||||||||| || ||||||||| | ||||||| ||||||  || ||||||   || ||| |||||| |  ||||||||||||| |  |    
T  4510993 aagattaaaaaaagtcaaatttttctcatataagttataagctgttttcataagcgatcctactaagattatggaaataaaatgaaaatagcttacgggc 4511092  T
Q  180 atgtcataagttgtttccataa 201  Q
    ||||| |||||||||| |||||    
T  4511093 atgtcttaagttgttttcataa 4511114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 8062494 - 8062587
Alignment:
Q  85 aaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaa 178  Q
    |||| ||||||||||| |||||||||||||| |||| || | ||||  || ||| ||||||||||| | |||| |  || ||||||||||||||    
T  8062494 aaaaaaaagtcaaattgttttcatataagctataagatgttctcataagctatcttagagagtttatgaaaataagctggaaatagcttatgaa 8062587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 31862458 - 31862575
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||| ||||||||||| |||| || |||||||| |||| || ||||||  |  ||||||||||| ||| | |||| |  |||||| |||||||| |     
T  31862458 aagataatataaagtcaaactattctcgtataagctataagatgttttcataagttatcctagagagcttatgaaaataagctgaaaacagcttatgcat 31862557  T
Q  180 atgtcataagttgtttcc 197  Q
    | ||||||||||| ||||    
T  31862558 aggtcataagttgcttcc 31862575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 40071806 - 40071835
Alignment:
Q  172 ttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||||||||||||||||||||||||    
T  40071806 ttatgaacatgtcataagttgtttccataa 40071835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 42508750 - 42508628
Alignment:
Q  1 tttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtca 96  Q
    ||||| ||||||||||||||||  ||||  |||||| ||| || ||||||||| | |||| |||  | || ||||||||||| || |||||||||||||     
T  42508750 tttgggtaaacaacttaattaagtgcttctaacataaacatttatcatataagggtttatgtattggcta-tttctataataaaatataaaataaagtcg 42508652  T
Q  97 aattattttcatataagctgtaag 120  Q
    | | ||||||||||||||| ||||    
T  42508651 attgattttcatataagctataag 42508628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 44348440 - 44348489
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||| | |||||  |||||||||||| ||||||||||||||||||    
T  44348440 tttctataacaaaagatgtaataaagtcaaaatattttcatataagctgt 44348489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 2093232 - 2093304
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcct 140  Q
    |||| |||||| ||||||||||||||||||||  ||||| | |||||| |||| || ||||||| || |||||    
T  2093232 tttcaataataaaagataaaataaagtcaaatggttttcttttaagctataagttgttttcattagctatcct 2093304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 8060671 - 8060755
Alignment:
Q  117 taagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||| ||||||  |||||||||||||| ||| |||||| |  |||||||| ||||||||| |  ||||| |||||| |||||    
T  8060671 taagctgttttcataagcaatcctagagagcttatggaaataagctgaaaataacttatgaactttccataatttgttttcataa 8060755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 11494080 - 11494150
Alignment:
Q  43 tcatataagtgcttat--atatgttattttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    |||||||||||||| |  ||||||||||||| |||| | ||||||| ||||||||||| | |||||||||||    
T  11494080 tcatataagtgcttttgtatatgttattttc-ataacaaaagataacataaagtcaaacttttttcatataa 11494150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 13561429 - 13561385
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    ||||||||| |||| || ||||||||||||||| |||||||||||    
T  13561429 tttctataacagaaaattaaataaagtcaaattgttttcatataa 13561385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 33714355 - 33714315
Alignment:
Q  65 tattttctataatagaagataaaataaagtcaaattatttt 105  Q
    |||||||||||| | ||||||||||||||||||| ||||||    
T  33714355 tattttctataacacaagataaaataaagtcaaactatttt 33714315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 37740449 - 37740410
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataaa 202  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  37740449 tgaaaatag-ttatggacatgtcataagttgtttccataaa 37740410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 42237540 - 42237492
Alignment:
Q  67 ttttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    |||| ||||| | ||||||||||||||| ||||| ||||||||||||||    
T  42237540 ttttttataacaaaagataaaataaagttaaattgttttcatataagct 42237492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 55)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 27693623 - 27693420
Alignment:
Q  1 tttggataaacaacttaattaagcttacaacatagacacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27693623 tttggataaacaacttaattaagcttacaacatagacacttctcatataagtgtttatatatgttattttctataatagaagataaaataaagtcaaatt 27693524  T
Q  101 attttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27693523 attttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 27693424  T
Q  201 aatt 204  Q
    ||||    
T  27693423 aatt 27693420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 27595751 - 27595548
Alignment:
Q  1 tttggataaacaacttaattaagcttacaacatagacacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaatt 100  Q
    |||||||||||||||||||||||||| ||  ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27595751 tttggataaacaacttaattaagcttgcagtatagacacttcccatgtaagtgcttatatatgttattttctataataaaagataaaataaagtcaaatt 27595652  T
Q  101 attttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 200  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27595651 attttcatataagctgtaagttaatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 27595552  T
Q  201 aatt 204  Q
    ||||    
T  27595551 aatt 27595548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 27615457 - 27615254
Alignment:
Q  1 tttggataaacaacttaattaagcttacaacatagacacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaatt 100  Q
    ||||||||||||| ||||||||||||| | ||||||||||| |||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  27615457 tttggataaacaaattaattaagcttatatcatagacacttatcatgtaagtgcttttatatgttattttctataataatagataaaataaagtcaaatt 27615358  T
Q  101 attttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 200  Q
     |||||||||||||||||||||||| ||||||||||  ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27615357 cttttcatataagctgtaagctgatatcatttgcaaatctagagaatttatggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 27615258  T
Q  201 aatt 204  Q
    ||||    
T  27615257 aatt 27615254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 281962 - 281834
Alignment:
Q  71 ctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatag 170  Q
    |||||| | |||||||||||||||||| || |||||||||||||| |||||||  |||||  || ||||||||||| | | |||||| |  |||||| |     
T  281962 ctataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaa 281863  T
Q  171 cttatgaacatgtcataagttgtttccat 199  Q
    |||||  ||||||||||||||| ||||||    
T  281862 cttatagacatgtcataagttgcttccat 281834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 30523627 - 30523745
Alignment:
Q  82 gataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacat 181  Q
    |||||||||| |||||||  | |||||||||||| |||| |  ||||||  || ||||| ||||| |||  ||||||| ||||||| |||||||||||||    
T  30523627 gataaaataatgtcaaatcgtcttcatataagctataagttt-tttcataagctatccttgagaggttatagaaattagttgaaaacagcttatgaacat 30523725  T
Q  182 gtcataagttgtttccataa 201  Q
    | ||||||||||||||||||    
T  30523726 ggcataagttgtttccataa 30523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 27614099 - 27614019
Alignment:
Q  199 taaattttccttttgtttatctttggttaaaagtaaccaaaatgtaacttgagggt---atggagcttcattttgtttatt 276  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||| ||||| |||   ||| ||||||||||||||||||    
T  27614099 taaatttgccttttgtttttctttggttagaagtaaccaaaatgtatcttgatggtgtaatgaagcttcattttgtttatt 27614019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 27726105 - 27726029
Alignment:
Q  211 ttgtttatctttggttaaaagtaaccaaaatgtaacttgagggt---atggagcttcattttgtttatttttgtatg 284  Q
    |||||| |||||||||| |||||||||||||| | ||||| |||   ||||||||||||||||||||||||||||||    
T  27726105 ttgtttttctttggttagaagtaaccaaaatgcatcttgatggtgtaatggagcttcattttgtttatttttgtatg 27726029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 27594573 - 27594504
Alignment:
Q  218 tctttggttaaaagtaaccaaaatgtaacttgagggt---atggagcttcattttgtttatttttgtatg 284  Q
    |||||||||| |||||||||||||||| ||||| |||   ||||||||||||||||||||||||| ||||    
T  27594573 tctttggttagaagtaaccaaaatgtatcttgatggtgtaatggagcttcattttgtttatttttatatg 27594504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 27727246 - 27727165
Alignment:
Q  14 cttaattaagcttacaacatagacacttctcatataagtgcttatat--atgttattttctataatagaagataaaataaag 93  Q
    |||||||||||||| |  ||| |||||| ||||||||||||||||||  | |||||||||||||||  ||||||||||||||    
T  27727246 cttaattaagcttatagtataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaag 27727165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 3217333 - 3217262
Alignment:
Q  43 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    |||||||||||||||| |||  | |||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  3217333 tcatataagtgcttatgtataagctatttt-tgtaagagaagataaaataaagtcaaattattttcatataag 3217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 10749345 - 10749300
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10749345 tttctataataaaagataaaataaagttaaattattttcatataag 10749300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 5550059 - 5550147
Alignment:
Q  43 tcatataagtgcttatatatgttat-tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||||||| ||| |  | |||| ||||||  |||||| ||||||||||||| |||||||||||||| ||||||| ||||||    
T  5550059 tcatataagtgcttatgtatatagtatttcgataataagagataacataaagtcaaattgttttcatataagctataagctgttttcat 5550147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 4006667 - 4006794
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | | ||||||||||||||||||| |||| ||||||||| |||| || ||||||  || ||||  ||||| ||| | |||| |  ||||||    
T  4006667 tttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaa 4006766  T
Q  168 tagcttatgaacatgtcataagttgttt 195  Q
    || |||||| |||| || ||||||||||    
T  4006767 taacttatggacatatcgtaagttgttt 4006794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 1402949 - 1403083
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | ||||||||||||||| ||| |||||||||||||||| |||  || ||||||  || ||| | ||||  |||  |||||||  |||| |    
T  1402949 tttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggagatcttatagaaattagctgaata 1403048  T
Q  168 tagcttatgaacatgtcataagttgtttccataaa 202  Q
    ||| ||||  | ||||||||||||||||| |||||    
T  1403049 tagtttatagatatgtcataagttgtttcgataaa 1403083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14340990 - 14340929
Alignment:
Q  1 tttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatat 60  Q
    ||||||||||||||||||||||  ||||| |||||| |||||| ||||||||||| ||||||    
T  14340990 tttggataaacaacttaattaagtgcttataacataaacacttatcatataagtgtttatat 14340929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 24838848 - 24838798
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| |||| | ||||||||||||||||||| ||||||||||||||    
T  24838848 aagataaaacaaagactaattattttcatataagctataagctgatttcat 24838798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 29274334 - 29274284
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||| ||||||    
T  29274334 aagataaaataaagtcaaattgttttcatataagctataaactgttttcat 29274284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 740909 - 740873
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttcca 198  Q
    |||||||| ||||||||||||||||||||||||||||    
T  740909 tgaaaataacttatgaacatgtcataagttgtttcca 740873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 2732341 - 2732309
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagct 115  Q
    |||||||||||||||||||||||||||||||||    
T  2732341 ataaaataaagtcaaattattttcatataagct 2732309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 6647359 - 6647471
Alignment:
Q  87 aataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcat 186  Q
    ||||||||||||||| ||| ||||| | | ||| ||| ||||||  || ||| ||||||| ||| | |||| | ||||||| | ||||||||||||||||    
T  6647359 aataaagtcaaattactttaatataggttataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgtcat 6647458  T
Q  187 aagttgtttccat 199  Q
    ||| | |||||||    
T  6647459 aagctatttccat 6647471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 20368204 - 20368164
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  20368204 ttgaaactagcttatgaacatgtcataagttgttttcataa 20368164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 22742333 - 22742373
Alignment:
Q  82 gataaaataaagtcaaattattttcatataagctgtaagct 122  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  22742333 gataaaataaagtcaaattgttttcatataagctataagct 22742373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 29940748 - 29940800
Alignment:
Q  67 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaa 119  Q
    |||||||||| | |||||||||||||||||| || ||||||| ||||||||||    
T  29940748 ttttctataacaaaagataaaataaagtcaatttgttttcatttaagctgtaa 29940800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 2027511 - 2027468
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctg 123  Q
    ||||||||||||||||||| ||||||||||||| || |||||||    
T  2027511 aagataaaataaagtcaaactattttcatataacctataagctg 2027468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 2455837 - 2455896
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||| ||| |||||| | |||||||||| |||||  |||||||||||||||||||||||    
T  2455837 gagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataa 2455896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2785855 - 2785750
Alignment:
Q  1 tttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttat--atatgttattttctataatagaagataaaataaagtca 96  Q
    ||||||||||||||||||||||  ||||| | |||| || ||| ||||||| ||||||||  || || |||||| ||||| | | ||||||| |||||||    
T  2785855 tttggataaacaacttaattaatcgcttatagcataaacgcttgtcatatatgtgcttatgcatgtgatattttgtataacaaatgataaaacaaagtca 2785756  T
Q  97 aattat 102  Q
    ||||||    
T  2785755 aattat 2785750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 7713990 - 7714025
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7713990 aagataaaataaagtcaaattgttttcatataagct 7714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 8010404 - 8010443
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  8010404 tgaaaatagcttatgaacatgtcatgagttgtttctataa 8010443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 9668028 - 9667973
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttcc 197  Q
    ||||| ||| |||||| | ||||||| |||||||| ||||||||||||||||||||    
T  9668028 gagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttcc 9667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 11340767 - 11340680
Alignment:
Q  44 catataagtgcttatatatgttatt-ttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||||||||||   ||  |||||||| | ||||||||||||||| || ||||||||||||| ||| |||| || ||||||    
T  11340767 catataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 11340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 27713472 - 27713507
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27713472 aagataaaataaagtcaaattcttttcatataagct 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 30522541 - 30522430
Alignment:
Q  84 taaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgt 183  Q
    ||||||||||| ||| |||||||||||||||| ||| ||| ||| ||| || ||||| ||||||||| | |||| |  | | ||  |||| |||||||||    
T  30522541 taaaataaagtgaaactattttcatataagctataatctgcttttattagctatcctggagagtttatgcaaataagctaacaacggcttttgaacatgt 30522442  T
Q  184 cataagttgttt 195  Q
    |||||| |||||    
T  30522441 cataagatgttt 30522430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 3204658 - 3204612
Alignment:
Q  69 ttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    |||||||||| |||||||||||||||| || | ||||||||||||||    
T  3204658 ttctataataaaagataaaataaagtcgaactgttttcatataagct 3204612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 9093661 - 9093611
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||    
T  9093661 aagataaaataaagttaaattgttttcgtataagctataagctgttttcat 9093611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 1575944 - 1575981
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  1575944 aaaacagcttatgaacatgtcataagttgttttcataa 1575981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 5730731 - 5730764
Alignment:
Q  169 agcttatgaacatgtcataagttgtttccataaa 202  Q
    ||||| ||||||||||||||||||||||||||||    
T  5730731 agcttgtgaacatgtcataagttgtttccataaa 5730764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 7931775 - 7931710
Alignment:
Q  136 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||| |||| |||||||||| |  |||||| | |||| |||||||||||||||||||| |||||    
T  7931775 atcctacagagcttacggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataa 7931710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 9027530 - 9027575
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    |||||| |||||||||||||||||||||||| | |||| |||||||    
T  9027530 tttctacaatagaagataaaataaagtcaaactgttttaatataag 9027575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 14492267 - 14492336
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagttt 149  Q
    |||||||||| |||||||||| |||| ||| ||||| ||||||| ||||||  |  ||||||||||||||    
T  14492267 aagataaaatgaagtcaaattgttttgatacaagctataagctgttttcataagttatcctagagagttt 14492336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 25100014 - 25100119
Alignment:
Q  86 aaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtca 185  Q
    ||||| ||||||||| |||||||| ||| | |||| || ||||||  || ||| || |||| |||  ||||| | |||||||||||  ||||||||||||    
T  25100014 aaatagagtcaaattgttttcatagaagttataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaatagcaaatgaacatgtca 25100113  T
Q  186 taagtt 191  Q
    ||||||    
T  25100114 taagtt 25100119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 27533161 - 27533116
Alignment:
Q  200 aaattttcc-ttttgtttatctttggttaaaagtaaccaaaatgta 244  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||||    
T  27533161 aaattttccattttgtttttctttggttagaagtaaccaaaatgta 27533116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 27692424 - 27692379
Alignment:
Q  200 aaattttcctttt-gtttatctttggttaaaagtaaccaaaatgta 244  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||    
T  27692424 aaattttcctttttgtttttctttggttagaagtaaccaaaatgta 27692379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 27707180 - 27707135
Alignment:
Q  200 aaattttcctttt-gtttatctttggttaaaagtaaccaaaatgta 244  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||    
T  27707180 aaattttcctttttgtttttctttggttagaagtaaccaaaatgta 27707135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 29269849 - 29269886
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattatttt 105  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  29269849 tttctataacagaagataaaataaagtcaaattgtttt 29269886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 32917246 - 32917283
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  32917246 aaaaaagcttatggacatgtcataagttgtttccataa 32917283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 769184 - 769224
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  769184 ttgaaaacagcttatgaacatgtcataagatgttttcataa 769224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 1904783 - 1904815
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||||| |||||||||    
T  1904783 ataaaataaagtcaaattatttttatataagct 1904815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 1909016 - 1909048
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||||| |||||||||    
T  1909016 ataaaataaagtcaaattatttttatataagct 1909048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 2514655 - 2514707
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||||| ||||||||||||||||||| || ||| |||| |||| ||||    
T  2514655 tttctataataaaagataaaataaagtcaaactaattttatatgagctataag 2514707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 2735024 - 2735084
Alignment:
Q  70 tctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||| | ||||||||||||||| ||||||||||  ||||| || ||||||| ||||||    
T  2735024 tctataacaaaagataaaataaagttaaattatttttgtataatctataagctgttttcat 2735084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 7148712 - 7148748
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttcc 197  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  7148712 ttgaaaatagcttatggacaagtcataagttgtttcc 7148748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 10452477 - 10452425
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||| | || |||||||||| ||||| |||||||||||||||| ||||    
T  10452477 tttctataacaaaatataaaataaaatcaaactattttcatataagctataag 10452425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 24836316 - 24836272
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    ||||||||| | ||||||||||||||||||||| ||||| |||||    
T  24836316 tttctataacaaaagataaaataaagtcaaattgttttcgtataa 24836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 31624136 - 31624176
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  31624136 ttgaaaacagcttatgaacatgtcataagctgttttcataa 31624176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 31671179 - 31671131
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttc 128  Q
    ||||||||| ||||| ||||| |||||||||||||| ||||||| ||||    
T  31671179 aagataaaacaaagttaaattgttttcatataagctataagctgttttc 31671131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 10357386 - 10357517
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | |||||||||||| || ||||| |||||||||||| |  ||| || ||||||  || ||| ||||||| |||| ||||| ||| |||||    
T  10357386 tttctataacaaaagataaaataatgttaaatttttttcatataagatacaagttgttttcataagccatcttagagagcttactgaaataactcgaaaa 10357485  T
Q  168 tagcttatgaacatgtcataagttgtttccat 199  Q
    ||||||||  ||||||||||||||||| ||||    
T  10357486 tagcttatatacatgtcataagttgttcccat 10357517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 2201093 - 2201211
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||| ||||||||| | |||||||||||||| ||||||| ||||||| || ||| | || |||||| |||||  |  |||||| || ||||||||    
T  2201093 aagataaaacaaagtcaaactgttttcatataagctataagctgttttcattagctatcttggatagtttaaggaaaaaagctgaaaagagtttatgaac 2201192  T
Q  180 atgtcataagttgtttcca 198  Q
    || ||||||||||||||||    
T  2201193 atatcataagttgtttcca 2201211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 36646487 - 36646366
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||||||||||  |||| |||||||||||| | |||  || ||||||  || |||||||||||||||  ||||| |  |||||| |||||||| ||    
T  36646487 aagataaaataaagtataattgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggac 36646388  T
Q  180 atgtcataagttgtttccataa 201  Q
    ||| ||||||| ||||||||||    
T  36646387 atgccataagtggtttccataa 36646366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 1395624 - 1395671
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  1395624 tttctataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 25195375 - 25195419
Alignment:
Q  66 attttctataatagaagataaaataaagtcaaattattttcatat 110  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  25195375 attttctataacaaaagataaaataaagtcaaattattttcatat 25195419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 237350 - 237476
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| ||||||||||||||| | ||||||| ||||| |||| | |||| || ||||||  |  |||||| |||| |||||||||| |  ||||||    
T  237350 tttctataacagaagataaaataaaataaaattatattcatgtaagttataagttgttttcataagttatcctatagagcttacggaaataagctgaaaa 237449  T
Q  168 tagcttatgaacatgtcataagttgttt 195  Q
     |||||||| ||||| |||| |||||||    
T  237450 cagcttatggacatg-cataggttgttt 237476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 29427688 - 29427629
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||| |||||||||| | |||||||||||||||||||||||||| || ||||| |||||    
T  29427688 gagagattacggaaataagttgaaaatagcttatgaacatgtcattaggtgttttcataa 29427629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 3044342 - 3044248
Alignment:
Q  102 ttttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttc 196  Q
    ||||||||||| || ||| ||| |||| | ||| | ||| ||||| ||| | |||| | ||||||| ||||||||||||||||||||||||||||    
T  3044342 ttttcatataatctataacctgttttcttatgctaacctggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagttgtttc 3044248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 23952223 - 23952161
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| | |||||||||| |||||||| ||||||  |||||||||||||||| ||||||    
T  23952223 tttctataacaaaagataaaattaagtcaaagtatttttgtataagctgtaagctgttttcat 23952161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 32555086 - 32555036
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||||||||||||||| |||||||| |||| || ||||||    
T  32555086 aagataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 48397590 - 48397662
Alignment:
Q  58 tatatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatt 131  Q
    |||| |||||||| ||||||| ||||||||||||||||||||| |||| || |||||| |||| || |||||||    
T  48397590 tataagttatttt-tataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcatt 48397662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 49465985 - 49465920
Alignment:
Q  136 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||| |||||||| |||||| | |||||||||| | ||| ||||||||||||||||||| ||||    
T  49465985 atcctaaagagtttatggaaataagttgaaaatagttcatggacatgtcataagttgtttctataa 49465920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 24887400 - 24887269
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| |  |||||||||||||||||| | | ||||||||||||  |||||| ||||||  || ||||| ||||| ||| || ||| |  ||||||    
T  24887400 tttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatgggaataagctgaaaa 24887301  T
Q  168 tagcttatgaacatgtcataagttgtttccata 200  Q
     || | ||| ||||||||||| |||||||||||    
T  24887300 cagttaatg-acatgtcataaattgtttccata 24887269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 49587057 - 49586986
Alignment:
Q  44 catataagtgctta-tatatgttattttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    |||||||||||||| |||| | ||||| |||||| | ||||||||||||||||||| | ||||||||||||||    
T  49587057 catataagtgcttactataagctattt-ctataacaaaagataaaataaagtcaaactgttttcatataagct 49586986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 10132823 - 10132704
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||||||| |  ||||| |||| ||||||| |  ||| || ||||||  || ||| || |||| |||||||||| |||  ||||||||||||  ||    
T  10132823 aagataaaataatgataaattgtttttatataagatacaagttgttttcataagccatcttacagagcttacggaaataactcaaaaatagcttatatac 10132724  T
Q  180 atgtcataagttgtttccat 199  Q
    ||||||||||||||| ||||    
T  10132723 atgtcataagttgttcccat 10132704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 26990687 - 26990730
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatata 111  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||    
T  26990687 tttctataacaaaagataaaataaagtcaaattcttttcatata 26990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 32703091 - 32703138
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||| ||| ||||||||||||| ||||||| ||||||||||||||    
T  32703091 tttctattataaaagataaaataaactcaaattgttttcatataagct 32703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 41452494 - 41452609
Alignment:
Q  86 aaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtca 185  Q
    ||||||||||||| | ||||||||| || ||||||||| ||||||  || ||||| ||||  ||  |||||| |  |||||| |||||||  |||| |||    
T  41452494 aaataaagtcaaactgttttcatattagttgtaagctgttttcataagctatcctggagaagttgtggaaataaggtgaaaacagcttatagacatatca 41452593  T
Q  186 taagttgtttccataa 201  Q
    ||||||||||| ||||    
T  41452594 taagttgtttctataa 41452609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 50004699 - 50004738
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  50004699 tgaaaacagcttaagaacatgtcataagttgtttccataa 50004738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 21872384 - 21872326
Alignment:
Q  72 tataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||| ||||||||||| |||||||| |||| ||||||||| |||| || ||||||    
T  21872384 tataataggagataaaataaggtcaaatttttttgatataagctataagttgttttcat 21872326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 27792837 - 27792887
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||| |||||| ||||||||||||||||| ||| || ||||||    
T  27792837 aagataaaataaggtcaaactattttcatataagctgcaagttgttttcat 27792887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 38318986 - 38319040
Alignment:
Q  141 agagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgttt 195  Q
    |||| ||||| |||||| |  |||||||||||||||||||||| |||||||||||    
T  38318986 agagtgtttatggaaataagctgaaaatagcttatgaacatgttataagttgttt 38319040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 42745085 - 42745127
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataaatt 204  Q
    |||||| | ||||||||||||||||||||||||| ||||||||    
T  42745085 tgaaaacaacttatgaacatgtcataagttgtttacataaatt 42745127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 2152202 - 2152161
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataaa 202  Q
    ||||||| |||||| |||||||||||||||||||| ||||||    
T  2152202 ttgaaaacagcttacgaacatgtcataagttgttttcataaa 2152161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 10073261 - 10073200
Alignment:
Q  140 tagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||| |||  ||||| |||| ||||||||||||  ||||||||||||||||| ||||||    
T  10073261 tagagagcttatagaaataacttaaaaatagcttatatacatgtcataagttgttcccataa 10073200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 10101593 - 10101548
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||| | ||||||||||||||| ||||| ||||||||||||    
T  10101593 tttctataacaaaagataaaataaagttaaattgttttcatataag 10101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 10212518 - 10212473
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||| | ||||||||||||||| ||||| ||||||||||||    
T  10212518 tttctataacaaaagataaaataaagttaaattgttttcatataag 10212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 20143866 - 20143921
Alignment:
Q  55 ttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    ||||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||||    
T  20143866 ttatataagttattt-ctataataaaagataaaat-aagtcaaactattttcatataa 20143921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 21367824 - 21367869
Alignment:
Q  85 aaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||||| | |||||||||||||||||| ||| ||||||    
T  21367824 aaaataaagtcaaaatgttttcatataagctgtaaactgttttcat 21367869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 23269323 - 23269268
Alignment:
Q  55 ttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    ||||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||||    
T  23269323 ttatataagttattt-ctataataaaagataaaat-aagtcaaactattttcatataa 23269268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 27291006 - 27290885
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||||||| || || | ||||||||||| ||  |||||| || |||| || |||||  |||||| | |||||| |  |||||| ||||||||  |    
T  27291006 aagataaaataaattcgaacttttttcatataatctaaaagctgtttgcattagctatcctgcagagttcatggaaataagctgaaaacagcttatgggc 27290907  T
Q  180 atgtcataagttgtttccataa 201  Q
    |||||||||| ||||| |||||    
T  27290906 atgtcataagctgttttcataa 27290885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 37273171 - 37273220
Alignment:
Q  152 ggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||| | ||||||| | |||||| ||||||||||||||||||||||||    
T  37273171 ggaaataagttgaaaacaacttatggacatgtcataagttgtttccataa 37273220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 41724259 - 41724304
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataaattttc 207  Q
    |||||| | |||||| |||||||||||||||||||||||| |||||    
T  41724259 tgaaaacaacttatggacatgtcataagttgtttccataagttttc 41724304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 42808932 - 42808981
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||| | ||||||||||||||| ||||| |||| |||||||||||    
T  42808932 tttctataacaaaagataaaataaagttaaattgtttttatataagctgt 42808981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 42809254 - 42809303
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||| | ||||||||||| ||| ||||| ||||||||||||||||    
T  42809254 tttctataacaaaagataaaatatagttaaattgttttcatataagctgt 42809303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 52619050 - 52619083
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgttt 195  Q
    ||||||||||||||||||||||||||| ||||||    
T  52619050 tgaaaatagcttatgaacatgtcataaattgttt 52619083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 53736230 - 53736185
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||| | |||||||||||| |||||| ||||||||||||||    
T  53736230 tttctataacaaaagataaaataatgtcaaactattttcatataag 53736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 5391925 - 5391965
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  5391925 ttgaaaacagcttatgaacatgtcataagctgttttcataa 5391965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 15304464 - 15304420
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    ||||||||| | ||||||||||||||| ||||| |||||||||||    
T  15304464 tttctataacaaaagataaaataaagttaaattgttttcatataa 15304420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 21574544 - 21574576
Alignment:
Q  169 agcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||||||||||||||||||||| |||||    
T  21574544 agcttatgaacatgtcataagttgttttcataa 21574576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 23315591 - 23315631
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||||||||||||||| |||||||||| ||| ||||    
T  23315591 aagataaaataaagtcaaattgttttcatataggctataag 23315631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 30923947 - 30923883
Alignment:
Q  136 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccata 200  Q
    |||||||||||||||  ||||| |  |||||| |||||||  |||||||||||| ||||||||||    
T  30923947 atcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 38462167 - 38462296
Alignment:
Q  4 ggataaacaacttaattaagct--tacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaat 99  Q
    |||||||||| ||||||||||   || | |||| |||||| ||||||||||| |||| |||  | ||||| |||||  | |||||||||||||||||||     
T  38462167 ggataaacaagttaattaagcgcctaaagcataaacacttatcatataagtgtttatttataagctattt-ctataccaaaagataaaataaagtcaaac 38462265  T
Q  100 tattttcatataagctgtaagctgatttcat 130  Q
    | |||||||||| ||| ||| ||| ||||||    
T  38462266 tgttttcatatatgctataaactgttttcat 38462296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 54965459 - 54965503
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    |||| |||||| |||||||||||||||||||  ||||||||||||    
T  54965459 tttcaataatataagataaaataaagtcaaacaattttcatataa 54965503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 4693 - 4607
Alignment:
Q  200 aaattttccttttgtttatctttggttaaaagtaaccaaaatgtaacttgagggt---atggagcttcattttgtttatttttgtatg 284  Q
    |||||||||||| |||| |||||||||| |||||||||||||| | ||||| |||   ||||||||||||||||||||||||||||||    
T  4693 aaattttccttt-gtttttctttggttagaagtaaccaaaatgcatcttgatggtgtaatggagcttcattttgtttatttttgtatg 4607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 5825 - 5744
Alignment:
Q  14 cttaattaagcttacaacatagacacttctcatataagtgcttatat--atgttattttctataatagaagataaaataaag 93  Q
    |||||||||||||| |  ||| |||||| ||||||||||||||||||  | |||||||||||||||  ||||||||||||||    
T  5825 cttaattaagcttatagtataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaag 5744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 18472 - 18437
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||| ||||||||||||||    
T  18472 aagataaaataaagtcaaattcttttcatataagct 18437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 33942115 - 33942228
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||||||||||||| | ||||||| |||||| |||| || ||||||  || ||| ||||||| | | | ||||||  |||||| |||||||||||    
T  33942115 aagataaaataaagtcaaactgttttcatgtaagctataagttgttttcataagccatcatagagagctaatgaaaattagctgaaaacagcttatgaac 33942214  T
Q  180 atgtcataagttgt 193  Q
    ||||||||||||||    
T  33942215 atgtcataagttgt 33942228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 1742149 - 1742016
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | || ||||||| |||||||| | |||  ||||||| | ||||||| ||||||   | ||| |  |||||||| |||||| | ||||| |    
T  1742149 tttctataacaaaatataaaatgaagtcaaactctttatatataagatataagctgttttcataatctatcatgaagagtttatggaaataagttgaaga 1742050  T
Q  168 tagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||| ||||||||||||||||||||||||    
T  1742049 tagcttatgcacatgtcataagttgtttccataa 1742016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 1939470 - 1939323
Alignment:
Q  46 tataagtgcttatatatgttattttctataatagaagataaaataaagtcaaattattttcatata-agctgtaagctgatttcatttgcaatcctagag 144  Q
    |||||| || |||||| ||||||| |||||| | ||||||||||||||| ||| |||||||||||  |||| ||| ||| ||||||  || || || |||    
T  1939470 tataagcgcatatataagttattt-ctataacaaaagataaaataaagtgaaactattttcatattgagctataa-ctgttttcataagctatactggag 1939373  T
Q  145 agtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtt 194  Q
    || ||| |||||| | ||||||| |||||||| |||||||||||||||||    
T  1939372 agcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 43141836 - 43141953
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||| |||||||||||| ||| |||||||||| |||| || ||||||  || |||||  |||||||| |||||| |  |||||| | ||||||  |    
T  43141836 aagataaagtaaagtcaaattgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggc 43141935  T
Q  180 atgtcataagttgtttcc 197  Q
    ||||||||||||||||||    
T  43141936 atgtcataagttgtttcc 43141953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 9478252 - 9478386
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| || |||||||||||| ||||| |||||||||||||||| || ||||  ||| |  || ||| | ||||||| | |||| | |  ||||||    
T  9478252 tttctataacagtagataaaataaactcaaaatattttcatataagctatatgctgtgttcgtaagctatcgtggagagttgatggaagtaagatgaaaa 9478351  T
Q  168 tagcttatgaacatgtcataagttgtttccataaa 202  Q
     |||||||| |||||| ||||||||||| ||||||    
T  9478352 cagcttatggacatgtaataagttgtttgcataaa 9478386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 22681290 - 22681168
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||| |||| |||||| |||||||||||||| ||||||| ||||||   | ||||||||||  ||| |||||| |  | |||| |||||||||||    
T  22681290 aagataaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaac 22681191  T
Q  180 atgtcataagttgtttccataaa 202  Q
    |||| ||  ||||||| ||||||    
T  22681190 atgttatttgttgttttcataaa 22681168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 4550796 - 4550833
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4550796 aaaatagcttatgaacatgtcataagttgtttccataa 4550833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 9878799 - 9878666
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | ||||||||||||| ||||| |||||| | ||| ||| |||| || ||||||| || ||||  ||||| ||   ||||| | | |||||    
T  9878799 tttctataacaaaagataaaataaactcaaactatttttacatatgctataagttgttttcattcgctatcccggagagcttgaagaaataagtcgaaaa 9878700  T
Q  168 tagcttatgaacatgtcataagttgtttccataa 201  Q
     | |||||| ||||||||||||||||||||||||    
T  9878699 caacttatggacatgtcataagttgtttccataa 9878666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 17952850 - 17952771
Alignment:
Q  37 cacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||| ||||||||| ||||||||||  | ||||| |||||| | ||||||||||||||||||| ||||||||||||||||    
T  17952850 cacttatcatataagagcttatatataagctattt-ctataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 15377732 - 15377859
Alignment:
Q  82 gataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaatta-cttgaaaatagcttatgaaca 180  Q
    ||||||||||||| | ||| |||||||||||| | ||||||| ||||||  || || ||   ||| ||| | |||| | ||| ||||||||||||| ||     
T  15377732 gataaaataaagttagattgttttcatataagttataagctgttttcataagctattctgaggagcttatgaaaataaacttaaaaatagcttatggacg 15377831  T
Q  181 tgtcataagttgtttccataaattttcc 208  Q
    |||||||||||||||||||| |||||||    
T  15377832 tgtcataagttgtttccatagattttcc 15377859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 18179346 - 18179223
Alignment:
Q  80 aagataaaataaagtcaaatt-attttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaa 178  Q
    |||| |||||||| ||||||  ||||||||||||||| ||||||| ||||||  || ||||| ||||  ||||| |||| |  ||||||||||| ||| |    
T  18179346 aagaaaaaataaaatcaaatacattttcatataagctataagctgctttcataagctatcctggagaacttacgaaaataagctgaaaatagctaatgga 18179247  T
Q  179 catgtcataagttgtttccataaa 202  Q
    |||||| |||| ||||| ||||||    
T  18179246 catgtcttaagatgttttcataaa 18179223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 656894 - 656832
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| | ||||||||||| | ||||||| ||||| ||||||||||||| |||||||||    
T  656894 tttctataacaaaagataaaatataatcaaattgttttcgtataagctgtaagttgatttcat 656832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 11513863 - 11513913
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||||||||| |||||||||||||| |||| || ||||||    
T  11513863 aagataaaataaagtcaaattgttttcatataagctataagttgttttcat 11513913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 1160846 - 1160798
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctgatttcattt 132  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  1160846 ataaaataaagtcaaactattttcatataagctataagct-atttcattt 1160798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 28933789 - 28933909
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||||| || ||||||||||||||| |||| | |||  || ||||||  || ||||||||||| | |  ||||| | ||||||| ||| |||||||    
T  28933789 aagataaaatcaaatcaaattattttcatttaagttataaattgttttcataagctatcctagagagctgatagaaataagttgaaaacagc-tatgaac 28933887  T
Q  180 atgtcataagttgtttccataa 201  Q
    ||| |||||||||||| |||||    
T  28933888 atgccataagttgttttcataa 28933909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 29316882 - 29316765
Alignment:
Q  78 agaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatga 177  Q
    |||||||||||||| || ||||| |||||| |||| || ||||||| ||||||  || ||| | ||||  ||| |||||| |  |||||| | |||||||    
T  29316882 agaagataaaataaggttaaattgttttcacataatctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatga 29316783  T
Q  178 acatgtcataagttgttt 195  Q
    |||||||||||| |||||    
T  29316782 acatgtcataagctgttt 29316765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 43173189 - 43173222
Alignment:
Q  82 gataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||||||||||||||||    
T  43173189 gataaaataaagtcaaattattttcatataagct 43173222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 2227023 - 2226983
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataaa 202  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  2227023 tgaaaatagctaatgaacatgccataagttgtttccataaa 2226983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 3423873 - 3423841
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataa 112  Q
    |||||||||||||||||||||||||||||||||    
T  3423873 aagataaaataaagtcaaattattttcatataa 3423841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 8017401 - 8017449
Alignment:
Q  82 gataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||| ||||| |||||||||||||||||||||||| ||| ||||||    
T  8017401 gataaaacaaagttaaattattttcatataagctgtaaactgttttcat 8017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 18066099 - 18066215
Alignment:
Q  86 aaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac-atgtc 184  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||  || ||| | ||||  ||| | |||| |  |||||||||||||||| | |||||    
T  18066099 aaataaagttaaattgttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtc 18066198  T
Q  185 ataagttgtttccataa 201  Q
    ||||| ||||| |||||    
T  18066199 ataagctgttttcataa 18066215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 25609749 - 25609801
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||| | |||||||||||||||||| |||||||| |||||||| ||||    
T  25609749 tttctataagaaaagataaaataaagtcaatttattttcgtataagctataag 25609801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 31740064 - 31740024
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  31740064 aagataaaataaagtcaaactattttcatataagctataag 31740024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 43529907 - 43529839
Alignment:
Q  136 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataaatt 204  Q
    ||||||||||| ||| | |||| |  ||||||||||||||||||||| |||||| ||||| ||||||||    
T  43529907 atcctagagagcttatgaaaataaactgaaaatagcttatgaacatggcataagctgttttcataaatt 43529839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 6988067 - 6988106
Alignment:
Q  67 ttttctataatagaagataaaataaagtcaaattattttc 106  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  6988067 ttttctataacaaaagataaaataaagtcaaattattttc 6988106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 20059099 - 20059142
Alignment:
Q  72 tataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||    
T  20059099 tataatagtagataaaataaagtctaattactttcatataagct 20059142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 28803649 - 28803576
Alignment:
Q  43 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||  ||||||| | |||| | ||||||||||||||||||| |  |||||||||||||    
T  28803649 tcatataagtgcttatatataagttattt-cgataacaaaagataaaataaagtcaaactgatttcatataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 34652079 - 34652020
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||| ||| |||||| | ||||||| |||||||| ||||||||||||||||||| ||||    
T  34652079 gagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataa 34652020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 3458606 - 3458659
Alignment:
Q  63 gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 117  Q
    |||||||| ||||| | ||||||||||||||||||| | ||||||||||||||||    
T  3458606 gttatttt-tataacaaaagataaaataaagtcaaacttttttcatataagctgt 3458659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 37053547 - 37053669
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcct-agagagtttacggaaattacttgaaa 166  Q
    ||||||||| |||| |||||||||||||||| | |||||||||||| | |||| |  ||||||| || ||| | | | |||| |  |||||||| |||||    
T  37053547 tttctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttcattagctatcatgaaaaagttcatagaaattacctgaaa 37053646  T
Q  167 atagcttatgaacatgtcataag 189  Q
    | |||||||| || |||||||||    
T  37053647 agagcttatggacgtgtcataag 37053669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 41042065 - 41042003
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataaatt 204  Q
    ||||||||| |||||| | ||||||| |||| ||| |||||| |||||||||||| |||||||    
T  41042065 gagagtttatggaaataagttgaaaacagctgatggacatgtaataagttgtttctataaatt 41042003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 3673734 - 3673805
Alignment:
Q  43 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    |||||||||||||||| |||  ||||||| |||||| | || |||||||||||| ||||| ||||||||||||    
T  3673734 tcatataagtgcttatgtattagttattt-ctataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 15120232 - 15120269
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  15120232 aaaacagctaatgaacatgtcataagttgtttccataa 15120269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 33192146 - 33192191
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||| | ||||||||||||||||||| | ||||||||||||    
T  33192146 tttctataacataagataaaataaagtcaaactgttttcatataag 33192191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 33944573 - 33944622
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctgatttcattt 132  Q
    |||||||||||||||||| |||||||||||||| |||  || ||||||||    
T  33944573 ataaaataaagtcaaattgttttcatataagctataaattgttttcattt 33944622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 34339871 - 34339904
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||||||||||||||||||||| ||||||    
T  34339871 aagataaaataaagtcaaattattttcgtataag 34339904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 9395082 - 9395146
Alignment:
Q  67 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatt 131  Q
    |||||||||  | ||||||||||||||  ||||| ||||||||||| || ||||||| |||||||    
T  9395082 ttttctatagaaaaagataaaataaagctaaattgttttcatataatctataagctgttttcatt 9395146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 10646394 - 10646362
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataa 112  Q
    ||||||||||||||||||||||||||| |||||    
T  10646394 aagataaaataaagtcaaattattttcctataa 10646362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 11344794 - 11344754
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||| || ||||| ||||||||||||||||||||||||    
T  11344794 ttgaaaacagtttatggacatgtcataagttgtttccataa 11344754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 29643511 - 29643471
Alignment:
Q  90 aaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||| ||||||||||||| ||||||| ||||||    
T  29643511 aaagtcaaattactttcatataagctctaagctgttttcat 29643471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 32821856 - 32821896
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataaa 202  Q
    |||||| |||||||| ||||||||||||||||||| |||||    
T  32821856 tgaaaacagcttatggacatgtcataagttgtttctataaa 32821896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 35485882 - 35485994
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||||||||||||| |||||   |||||||| |||| || ||| ||  || |||||  ||||  || |||||| |  |||||| |||||||||||    
T  35485882 aagataaaataaagtcaaactatttcattataagctataagttgtttttataagctatcctgaagagcctatggaaatgagctgaaaacagcttatgaac 35485981  T
Q  180 atgtcataagttg 192  Q
    || ||||||||||    
T  35485982 atatcataagttg 35485994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 15437916 - 15438049
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | || ||||||| |||||||| | |||||| || |||   ||| || ||||||  || ||||| |||||||||||||||| |  |||||     
T  15437916 tttctataacaaaaaataaaattaagtcaaactgttttcaaatcagccagaagttgttttcataggctatcctcgagagtttacggaaataagctgaaag 15438015  T
Q  168 tagcttatgaacatgtcataagttgtttccataa 201  Q
    || |||||||||||||||||||||||||||||||    
T  15438016 taacttatgaacatgtcataagttgtttccataa 15438049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 15361676 - 15361728
Alignment:
Q  78 agaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  15361676 agaagataaagtaaagtcaaattattttcatataagctataagctgttttcat 15361728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 7218191 - 7218064
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    |||| |||||| ||| ||||||||||||||||| |||||||||||||| |||| || ||||||   | ||||| ||||  ||| | |||| | |||||||    
T  7218191 tttccataataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaa 7218092  T
Q  168 tagcttatgaacatgtcataagttgttt 195  Q
     ||||| ||||| |||||||||| ||||    
T  7218091 cagcttgtgaacgtgtcataagtcgttt 7218064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 49517023 - 49517085
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||||||    
T  49517023 tttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcat 49517085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 1879144 - 1879095
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  1879144 tttctataacagaagataaaataaagtcaaaatgttttcatataagctgt 1879095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 17269177 - 17269324
Alignment:
Q  43 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcct 140  Q
    |||||||||||||||| |||  ||||||| ||| || | |||  |||||||||||||||| |||||||||||||  |||| || ||||||  || |||||    
T  17269177 tcatataagtgcttatgtataagttattt-ctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcct 17269275  T
Q  141 agagagtttacggaaattacttgaaaatagcttatgaacatgtcataag 189  Q
     ||||| |||||| ||| | || |||| | || ||||||||||||||||    
T  17269276 ggagagcttacggtaataagttaaaaacaactcatgaacatgtcataag 17269324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 45234150 - 45234191
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcata 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  45234150 tttctataataaaagataaaataaagtcaaattattttcata 45234191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 25006152 - 25006089
Alignment:
Q  67 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||| ||| | ||||||||||||||||| |||||||||||||| |||| || ||||||    
T  25006152 ttttctataacagacggtaaaataaagtcaaattgttttcatataagctataagttgttttcat 25006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 28467412 - 28467377
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||||||||||||||||||    
T  28467412 aagataaaataaagtcaaattattttcatataagct 28467377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 35925717 - 35925776
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||| |||||| | ||||||| ||||||||||||||||||||| ||||| |||||    
T  35925717 gagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 6262057 - 6262099
Alignment:
Q  152 ggaaattacttgaaaatagcttatgaacatgtcataagttgtt 194  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  6262057 ggaaataagttgaaaatagcttatgaacatgtcataagttgtt 6262099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 23445380 - 23445414
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgttt 195  Q
    |||||||||||||||||||||||||||||||||||    
T  23445380 ttgaaaatagcttatgaacatgtcataagttgttt 23445414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 27738300 - 27738250
Alignment:
Q  65 tattttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||| || | ||||||||||||||||||||| ||||||||||||||    
T  27738300 tattttctacaacaaaagataaaataaagtcaaattgttttcatataagct 27738250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 33204493 - 33204443
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||| || |||||||| |||||||||||||||| ||||||    
T  33204493 aagataaaataaagttaatttattttcgtataagctgtaagctgttttcat 33204443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 44032116 - 44031998
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | ||| ||||||||||||||||| |||||||||||||| ||| ||  |||| |  |  ||| |  |||| ||| ||||||||  ||||||    
T  44032116 tttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttcttaagttatcttgaagagcttatggaaattagctgaaaa 44032017  T
Q  168 tagcttatgaacatgtcat 186  Q
    ||||||||| |||||||||    
T  44032016 tagcttatggacatgtcat 44031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 48830181 - 48830131
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||| ||||||    
T  48830181 aagataaaataaagtcaaactattttcatataagctataaactgttttcat 48830131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 4200150 - 4200229
Alignment:
Q  37 cacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||| |||| |||||| ||||||||  |||||||| ||||| | |||||||||||||||||| || ||||||||||||||    
T  4200150 cacttatcatctaagtgtttatatataagttatttt-tataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 6976952 - 6977008
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccat 199  Q
    ||||||||| |||||| | || |||| |||||||||||||||||||||||||||||||    
T  6976952 gagagtttatggaaataagtt-aaaacagcttatgaacatgtcataagttgtttccat 6977008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 9656618 - 9656658
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctg 123  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  9656618 ataaaataaagttaaattattttcatataagctataagctg 9656658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 15360847 - 15360899
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||||| ||||    
T  15360847 tttctataacaaaagataaaataaagtcaaactgttttcatataagctataag 15360899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 25479546 - 25479654
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||||||| |||||||| | |||||||| ||| |||| || ||||||  || ||||||||||| ||| | |||| |  |||||| | || ||||||    
T  25479546 aagataaaataacgtcaaattgtcttcatataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaac 25479645  T
Q  180 atgtcataa 188  Q
    |||||||||    
T  25479646 atgtcataa 25479654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 7274082 - 7274001
Alignment:
Q  43 tcatataagtgcttat--atatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctg 123  Q
    |||||||| |||||||  |||||||||||| ||||| | ||||| ||||||||||||||| |||||||| ||| | |||||||    
T  7274082 tcatataaatgcttatgtatatgttatttt-tataacaaaagatgaaataaagtcaaattgttttcatacaagttataagctg 7274001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 10439651 - 10439686
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagct 115  Q
    |||||||||| |||||||||||||||||||||||||    
T  10439651 aagataaaatgaagtcaaattattttcatataagct 10439686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 17628646 - 17628685
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  17628646 tgaaaacagcttatggacatgtcataagttgtttccataa 17628685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 35017531 - 35017649
Alignment:
Q  72 tataatagaagataaaataaagtcaaat--tattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaata 169  Q
    ||||||| |||||||||||||||||||   | ||||| ||||| || || |||| ||||||  ||  |||| ||||| ||| |||||| | |||||||||    
T  35017531 tataatacaagataaaataaagtcaaacactgttttcgtataatctatatgctgttttcataagctgtcctggagagcttatggaaataagttgaaaata 35017630  T
Q  170 gcttatgaacatgtcataa 188  Q
     |||||| |||||||||||    
T  35017631 acttatggacatgtcataa 35017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 43338163 - 43338202
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  43338163 tgaaaatagattatgaacatgtcataagctgtttccataa 43338202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 44936707 - 44936660
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||| | ||||||| ||||||||||| ||||||||||||||||    
T  44936707 tttctataacaaaagataagataaagtcaaactattttcatataagct 44936660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 4549659 - 4549525
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||| | || ||||| |||||||| ||| | |||||||| ||||| |||| || ||||||  |||||||| ||||| |||  ||||||  |||||||    
T  4549659 tttctatgacagcagatataataaagtaaaactgttttcatacaagctataagatgttttcataagcaatcctggagagcttattgaaatttgttgaaaa 4549560  T
Q  168 tagctt-atgaacatgtcataagttgtttccataa 201  Q
     | ||| ||  ||||||||||||||||||| ||||    
T  4549559 caactttatagacatgtcataagttgtttctataa 4549525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 15515506 - 15515628
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||| |||||| ||||| | ||||| |||||||| |||| || ||||||  |  ||| | || || ||| |||||| | ||||||||||| |||  ||    
T  15515506 aagatagaataaaatcaaaatgttttcgtataagctataagttgttttcataagttatcatggatagcttatggaaataaattgaaaatagcgtattgac 15515605  T
Q  180 atgtcataagttgtttccataaa 202  Q
    |||||||||||||||| ||||||    
T  15515606 atgtcataagttgttttcataaa 15515628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 15942762 - 15942728
Alignment:
Q  170 gcttatgaacatgtcataagttgtttccataaatt 204  Q
    |||||||||||||||||||||||||| ||||||||    
T  15942762 gcttatgaacatgtcataagttgttttcataaatt 15942728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 17631120 - 17631086
Alignment:
Q  167 atagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||||| ||||||||||||||||||||||||    
T  17631120 atagcttatggacatgtcataagttgtttccataa 17631086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 29007833 - 29007771
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| | |||| ||| |||||||||| |||||||||||||||| |||| || ||||||    
T  29007833 tttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 30371113 - 30371163
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||| ||||||| |||||||||||||| |||| || ||||||    
T  30371113 aagataaaataaactcaaattgttttcatataagctataagttgttttcat 30371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 30815753 - 30815707
Alignment:
Q  67 ttttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    |||||||||| | ||||||||||||||| ||| ||||||||||||||    
T  30815753 ttttctataacaaaagataaaataaagttaaactattttcatataag 30815707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 45204994 - 45205068
Alignment:
Q  42 ctcatataagtgcttatatatgttattt-tctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||| ||| ||||  || | ||||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  45204994 ctcatataagtgcgtatgtatgaaatatatctatgataaaagataaaataaagtcaaactatttccatataagct 45205068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 3070113 - 3070080
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgttt 195  Q
    |||||| |||||||||||||||||||||||||||    
T  3070113 tgaaaacagcttatgaacatgtcataagttgttt 3070080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 4363815 - 4363702
Alignment:
Q  3 tggataaacaacttaattaa-gcttacaacatagacacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaatta 101  Q
    |||| ||||| ||||||||  ||||| | |||| |||||| |||||||||||||||| |||  | | || ||||| | ||||| |||||| |||||| |     
T  4363815 tggaaaaacatcttaattaccgcttatagcataaacacttgtcatataagtgcttatgtatactctattttataacaaaagattaaataatgtcaaactg 4363716  T
Q  102 ttttcatataagct 115  Q
    ||||||||||||||    
T  4363715 ttttcatataagct 4363702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 4699636 - 4699599
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  4699636 aaaacagcttatgaacatgtcataagttgttttcataa 4699599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 10199513 - 10199404
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||||||||||||| ||||||| ||||| |  ||||||  ||||||  || ||  ||||||| ||| | |||| |  |||||| | |||||||||    
T  10199513 aagataaaataaagtcaaactattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaac 10199414  T
Q  180 atgtcataag 189  Q
    ||||||||||    
T  10199413 atgtcataag 10199404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 14737822 - 14737781
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcata 109  Q
    ||||||||| | ||||||||||||||||||||| ||||||||    
T  14737822 tttctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 19412613 - 19412580
Alignment:
Q  169 agcttatgaacatgtcataagttgtttccataaa 202  Q
    |||||||| |||||||||||||||||||||||||    
T  19412613 agcttatggacatgtcataagttgtttccataaa 19412580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 26184704 - 26184745
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcata 109  Q
    ||||||||| | ||| ||||||||||||||||||||||||||    
T  26184704 tttctataagaaaaggtaaaataaagtcaaattattttcata 26184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 37811841 - 37811938
Alignment:
Q  104 ttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||||  ||||||||| ||||||  || ||| | ||||| | | |||||| | ||||||| || |||||||||||||||||| ||||| |||||    
T  37811841 ttcatataaattgtaagctgttttcataagccatcatggagagctaatggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataa 37811938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 49557026 - 49557156
Alignment:
Q  3 tggataaacaacttaattaag--cttacaacatagacacttctcatataagtgct--tatatatgttattttctataatagaagataaaataaagtcaaa 98  Q
    |||||||||| ||||||||||  |||| ||| ||  ||||| |||||||||||||  | |||| ||||||| |||||| | ||||||||||||||| |||    
T  49557026 tggataaacagcttaattaagtgcttataacgtaatcacttatcatataagtgctgctgtataagttattt-ctataacaaaagataaaataaagttaaa 49557124  T
Q  99 ttattttcatataagctgtaagctgatttcat 130  Q
    |  | ||||| |||||| |||| || ||||||    
T  49557125 tagtattcatttaagctataagttgttttcat 49557156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 17628552 - 17628596
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    |||||||| || |||||||| |||||||||||| |||||||||||    
T  17628552 tttctatattaaaagataaagtaaagtcaaattgttttcatataa 17628596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 30418202 - 30418166
Alignment:
Q  165 aaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  30418202 aaataacttatggacatgtcataagttgtttccataa 30418166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 34179987 - 34179927
Alignment:
Q  70 tctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||| | ||||||||||||||||||||| |||| || |||||| ||| ||| ||||||    
T  34179987 tctataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcat 34179927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 43371989 - 43371957
Alignment:
Q  81 agataaaataaagtcaaattattttcatataag 113  Q
    |||||||||||||| ||||||||||||||||||    
T  43371989 agataaaataaagtaaaattattttcatataag 43371957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 45804230 - 45804274
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||    
T  45804230 tttctataataaataataaaataaagtcaaactattttcatataa 45804274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 45990163 - 45990123
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||||||||| ||||| |||||||||||||| ||||    
T  45990163 aagataaaataaagtaaaattgttttcatataagctataag 45990123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 47498941 - 47498905
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctg 116  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  47498941 aagataaaataaagttaaattattttcgtataagctg 47498905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 27459 - 27591
Alignment:
Q  1 tttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtca 96  Q
    |||||||||||||||||| |||  ||||| | ||||  | ||| |||| ||||||||||| |||  ||||||| |||||| |||||||||||||||||||    
T  27459 tttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttattt-ctataacagaagataaaataaagtca 27557  T
Q  97 aattattttcatataagctgtaagctgatttcat 130  Q
    |||| ||||||||||| || |||| || ||||||    
T  27558 aattgttttcatataaactataagttgttttcat 27591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 28340985 - 28340883
Alignment:
Q  45 atataagtgcttat--atatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctag 142  Q
    ||||||||||||||  ||||| |||||| ||||||| ||||| |||| |||||||||| || ||||||||||| ||||||| ||||||  || |||||||    
T  28340985 atataagtgcttatctatatgctatttt-tataataaaagatgaaatgaagtcaaattgttgtcatataagctataagctgttttcataagctatcctag 28340887  T
Q  143 agag 146  Q
    ||||    
T  28340886 agag 28340883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 38010679 - 38010801
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||| |||| |||||| |||||||||||||| ||||||| ||||||   | ||||||||||  ||| |||||| |  | |||| |||||||||||    
T  38010679 aagataaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaac 38010778  T
Q  180 atgtcataagttgtttccataaa 202  Q
    |||| ||  ||||||| ||||||    
T  38010779 atgttatttgttgttttcataaa 38010801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 27121703 - 27121654
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  27121703 tttctataataaatgataaaataaagtcaaattgttttcatataagctgt 27121654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 28165044 - 28165177
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | |||||||||| |||||||||| |||| ||||||||| ||| |||  || ||  || ||| | ||||| ||| |||||| | |||||||    
T  28165044 tttctataacaaaagataaaatgaagtcaaattgttttaatataagctataaactgtctttataagctatcatggagagcttatggaaataagttgaaaa 28165143  T
Q  168 tagcttatgaacatgtcataagttgtttccataa 201  Q
     |||||||||||| ||| | || |||||||||||    
T  28165144 cagcttatgaacaggtcttgagctgtttccataa 28165177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 12835124 - 12834996
Alignment:
Q  1 tttggataaacaacttaattaagc--ttacaacatagacacttctcatataagtgcttat--atatgttattttctataatagaagataaaataaagtca 96  Q
    |||||||||||||||| |||||||  ||| |||||| || |||  | ||| |||||||||  | ||| ||||| ||| || | |||||||||||||||||    
T  12835124 tttggataaacaacttgattaagcgcttataacataaacgcttagcgtatgagtgcttatgcagatgctattt-ctacaacaaaagataaaataaagtca 12835026  T
Q  97 aattattttcatataagctgtaagctgatt 126  Q
    |||| ||||||||| |||| ||||||||||    
T  12835025 aattgttttcatattagctataagctgatt 12834996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 31002726 - 31002769
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctg 123  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  31002726 aagataaaataaagtcaaaatattttcatataagctataagctg 31002769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 40689091 - 40689048
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctg 123  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  40689091 aagataaaataaagttaaattattttcatataagctataagctg 40689048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 35536060 - 35536114
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagct 122  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||| | ||||||    
T  35536060 tttctataacataagataaaataaagtcaaattgttttcatataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 3501079 - 3500951
Alignment:
Q  72 tataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagc 171  Q
    ||||||| |||||||||||||||||||| ||||||||||||  | |||| ||  ||||||  | |||||| | ||  || |||||| |  |||||| |||    
T  3501079 tataataaaagataaaataaagtcaaatcattttcatataaaatataagttgtattcattaactatcctata-agcgtatggaaataagctgaaaacagc 3500981  T
Q  172 ttatgaacatgtcataagttgtttccataa 201  Q
    | ||| |||||||||||||| |||||||||    
T  3500980 tgatgtacatgtcataagttatttccataa 3500951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 22388091 - 22387979
Alignment:
Q  1 tttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttat--atatgttattttctataatagaagataaa---ataaag 93  Q
    ||||||||||||||||||||||  ||||| |||||| |||||| |||| |||||||||||  ||| | || ||||||||| | ||||||||   ||||||    
T  22388091 tttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagcta-tttctataacaaaagataaaagtataaag 22387993  T
Q  94 tcaaattattttca 107  Q
    ||||||| ||||||    
T  22387992 tcaaattcttttca 22387979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 29290366 - 29290419
Alignment:
Q  148 ttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||||   ||||||| |||||||| ||||||||||||||||||||||||    
T  29290366 ttacggaaatatgttgaaaacagcttatggacatgtcataagttgtttccataa 29290419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 30134014 - 30134063
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttca 129  Q
    |||||||||||||||||| || ||||| |||||||| |||||||||||||    
T  30134014 aagataaaataaagtcaacttgttttcgtataagctttaagctgatttca 30134063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 39591584 - 39591539
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||||    
T  39591584 tttctataacaaaagataaaataaagtcaaattgttttcatataag 39591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 46825052 - 46825097
Alignment:
Q  69 ttctataatagaagataaaataaagtcaaattattttcatataagc 114  Q
    |||||||| | ||||||||||||||||||||| |||||||||||||    
T  46825052 ttctataaaaaaagataaaataaagtcaaattgttttcatataagc 46825097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 48157237 - 48157104
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||||| ||||||||||||||| ||||| |||| ||||||||| |||  || |||||   || || |  ||||  ||| |||||| |  ||||||    
T  48157237 tttctataataaaagataaaataaagtgaaattgttttaatataagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaa 48157138  T
Q  168 tagcttatgaacatgtcataagttgtttccataa 201  Q
     |||||||| ||||| ||||||||||||| ||||    
T  48157137 cagcttatggacatggcataagttgtttctataa 48157104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 49060493 - 49060545
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||| | || ||||||||||||||||||||||| ||||||||| ||||    
T  49060493 tttctataacaaaaaataaaataaagtcaaattatttttatataagctataag 49060545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 3802278 - 3802212
Alignment:
Q  45 atataagtgcttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    |||||||||||| |||| | ||||| |||||||| ||| ||||||||||||||||  |||||||||||    
T  3802278 atataagtgcttgtataagctattt-ctataataaaaggtaaaataaagtcaaatcgttttcatataa 3802212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 23918922 - 23918957
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23918922 aagataaaataaagtcaaattgttttcatataagct 23918957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 36598379 - 36598340
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  36598379 tgaaaacagcttatgaacatgtcataagatgtttccataa 36598340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 39908099 - 39908056
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctg 123  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||    
T  39908099 aagataaaataaagtcaaataattatcatataagctataagctg 39908056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 44615147 - 44615088
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||| |||||| || |||||| ||||| || |||||||||||||||||| |||||    
T  44615147 gagagtttatggaaataacgtgaaaacagcttgtggacatgtcataagttgttttcataa 44615088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 1417229 - 1417263
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagc 114  Q
    ||||||||||||||||||||| |||||||||||||    
T  1417229 aagataaaataaagtcaaattgttttcatataagc 1417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 3468579 - 3468697
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||||| |||||||| ||||||| |||||| | ||||||  ||||||   | ||||||||||  ||  |||||| | ||| ||| | |||||| ||    
T  3468579 aagataaaatgaagtcaaactattttcgtataagttataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatggac 3468678  T
Q  180 atgtcataagttgtttcca 198  Q
    ||||||| |||||||||||    
T  3468679 atgtcattagttgtttcca 3468697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 12110325 - 12110375
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||| ||||||    
T  12110325 aagataaaataaagtcaaattgttttggtataagctataagctgttttcat 12110375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 22759151 - 22759201
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||  ||||| ||||||||||||||  |||||||||||||    
T  22759151 aagataaaataaaggaaaattgttttcatataagctaaaagctgatttcat 22759201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 27548228 - 27548278
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||||||| |||| ||||||| |||||| ||||||| ||||||    
T  27548228 aagataaaataaagtctaattgttttcatttaagctataagctgttttcat 27548278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 36537964 - 36537994
Alignment:
Q  171 cttatgaacatgtcataagttgtttccataa 201  Q
    |||||||||||||||||||||||||||||||    
T  36537964 cttatgaacatgtcataagttgtttccataa 36537994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 11048074 - 11048107
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgttt 195  Q
    |||||| |||||||||||||||||||||||||||    
T  11048074 tgaaaacagcttatgaacatgtcataagttgttt 11048107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 15740432 - 15740395
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  15740432 aaaacagcttatgaacatgtcataagttgttttcataa 15740395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 18749927 - 18749878
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||| | |||||||| |||||||||| |||||| |||||||||||    
T  18749927 tttctataacaaaagataaagtaaagtcaaactatttttatataagctgt 18749878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22388611 - 22388547
Alignment:
Q  1 tttggataaacaacttaattaa--gcttacaacatagacacttc-tcatataagtgcttatatat 62  Q
    ||||||||||||||||||||||  ||||| |||||||||  ||| |||||||||| |||||||||    
T  22388611 tttggataaacaacttaattaaacgcttataacatagacgtttcatcatataagtacttatatat 22388547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 24909638 - 24909679
Alignment:
Q  89 taaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||||||||||||||| |||| || ||||||    
T  24909638 taaagtcaaattattttcatataagctataagttgttttcat 24909679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 30456555 - 30456522
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||||||||||||||| ||||||||||||    
T  30456555 aagataaaataaagtcaaattgttttcatataag 30456522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 40428523 - 40428564
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctga 124  Q
    |||||||||||| |||||||||||||||||||| ||| ||||    
T  40428523 ataaaataaagttaaattattttcatataagctataaactga 40428564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 47046211 - 47046178
Alignment:
Q  82 gataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||||||| ||||||||||||||    
T  47046211 gataaaataaagtcaaattgttttcatataagct 47046178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 5269483 - 5269519
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattt 104  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  5269483 tttctttaataaaagataaaataaagtcaaattattt 5269519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 9423617 - 9423577
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataaa 202  Q
    |||||| | |||||||||||||||||| |||||||||||||    
T  9423617 tgaaaacaacttatgaacatgtcataaattgtttccataaa 9423577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 12234937 - 12234873
Alignment:
Q  137 tcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||||| ||| |||||| |  |||||| |||||||  ||||||||||||||||||| ||||    
T  12234937 tcctagagagcttatggaaataagctgaaaacagcttatagacatgtcataagttgtttctataa 12234873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 24895330 - 24895370
Alignment:
Q  89 taaagtcaaattattttcatataagctgtaagctgatttca 129  Q
    ||||||||||||||||||||||||||| |||| || |||||    
T  24895330 taaagtcaaattattttcatataagctataagttgttttca 24895370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 30751485 - 30751513
Alignment:
Q  83 ataaaataaagtcaaattattttcatata 111  Q
    |||||||||||||||||||||||||||||    
T  30751485 ataaaataaagtcaaattattttcatata 30751513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 39539804 - 39539764
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataaa 202  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  39539804 tgaaaacagcttatggacatgtcataagttgtttccgtaaa 39539764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 43318645 - 43318597
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctg 116  Q
    ||||||||| | | ||||||||||||||||||| || ||||||||||||    
T  43318645 tttctataacaaatgataaaataaagtcaaattgttatcatataagctg 43318597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 44686976 - 44687016
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||| |||| ||| ||||||||||||||||||||||||    
T  44686976 ttgaaaacagctcatggacatgtcataagttgtttccataa 44687016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 48496864 - 48496900
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttcca 198  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  48496864 tgaaaatagtttatcaacatgtcataagttgtttcca 48496900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 4071835 - 4071887
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  4071835 tttctataacaaaagataaaataaagtcaaattattttcatataagctataag 4071887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 6466151 - 6466036
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||| ||||||||| ||||| ||||  ||||| || |||| || || |||  || || |||||||| ||| |||||| | |||||||||||||||||||    
T  6466151 aagatcaaataaagtgaaattctttttgtataatctataagttgtttccataagctattctagagagattatggaaataagttgaaaatagcttatgaac 6466052  T
Q  180 atgtcataagttgttt 195  Q
    || |||||||||||||    
T  6466051 atctcataagttgttt 6466036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 8130127 - 8130189
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||| ||| ||| ||||||    
T  8130127 tttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcat 8130189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 11264260 - 11264378
Alignment:
Q  74 taatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagctt 173  Q
    ||||| ||||||||||||| |||  |||| |||||||| | | |||| || ||||||  || ||||||||||| ||| |||||| | ||||||| || ||    
T  11264260 taataaaagataaaataaactcatgttatattcatatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagttt 11264359  T
Q  174 atgaacatgtcataagttg 192  Q
    ||| |||||||||||||||    
T  11264360 atggacatgtcataagttg 11264378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 20936330 - 20936208
Alignment:
Q  84 taaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgt 183  Q
    |||||| |||||||||| |||| |||||| || || | || |||||| | | ||||| ||||| ||| |||||| |  |||||| ||||||||||||| |    
T  20936330 taaaatgaagtcaaattgtttttatataatctataggttgttttcatattctatcctggagagattatggaaataaggtgaaaacagcttatgaacatat 20936231  T
Q  184 cataagttgtttccataaatttt 206  Q
    |||||||||||| ||||| ||||    
T  20936230 cataagttgttttcataagtttt 20936208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 49219092 - 49219154
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||| |||| || ||||||    
T  49219092 tttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcat 49219154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 1137665 - 1137798
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    |||||||||||  | |||||||||||||| ||||||||   |||| || ||||||| ||||||   | |||| |||||| ||| |||||| |  ||||||    
T  1137665 tttctataataccatataaaataaagtcatattatttttgaataatctataagctgctttcataaactatccaagagagcttatggaaataaactgaaaa 1137764  T
Q  168 tagcttatgaacatgtcataagttgtttccataa 201  Q
     | ||||||||||||||||||| ||||| |||||    
T  1137765 caacttatgaacatgtcataagatgttttcataa 1137798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 2996538 - 2996659
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||||| ||||||||| |||| ||||||| | |||| || ||||||  || ||| | |||||  || | |||| | ||||||| |||||||| ||    
T  2996538 aagataaaatacagtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggac 2996637  T
Q  180 atgtcataagttgtttccataa 201  Q
    |||||||||||||||| |||||    
T  2996638 atgtcataagttgttttcataa 2996659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 36734784 - 36734890
Alignment:
Q  9 aacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatatatgttat-tttctataatagaagataaaataaagtcaaattatttt 105  Q
    ||||||||||||||  ||||| |||||| ||  || |||||||||||||||| |||  | | ||||||||| | ||| ||||||||||||||| ||||||    
T  36734784 aacaacttaattaaaagcttataacatatacctttatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaactatttt 36734883  T
Q  106 catataa 112  Q
    |||||||    
T  36734884 catataa 36734890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 53315297 - 53315412
Alignment:
Q  86 aaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtca 185  Q
    ||||||| ||||| |||||||||||||||| ||||||| | |||    ||| ||||||||| ||| | |||| | || ||||||||||||| |||||| |    
T  53315297 aaataaattcaaactattttcatataagctataagctgttctcaaaaacaaacctagagagcttatgaaaataagttaaaaatagcttatggacatgtga 53315396  T
Q  186 taagttgtttccataa 201  Q
    || ||||||| |||||    
T  53315397 tatgttgttttcataa 53315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 53626728 - 53626791
Alignment:
Q  67 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||| | ||||||||||||| ||||| | |||||||||||||| ||||||| ||||||    
T  53626728 ttttctataacaaaagataaaataaattcaaaatgttttcatataagctataagctgttttcat 53626791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 6987790 - 6987725
Alignment:
Q  136 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||| ||||| ||| |||||| | |||||||||| ||||| |||||||||||||||| |||||||    
T  6987790 atcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataagttgtatccataa 6987725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 7022592 - 7022662
Alignment:
Q  40 ttctcatataagtgctta--tatatgttattttctataatagaagataaaataaagtcaaattattttcata 109  Q
    ||||||||||||||||||  |||| | |||||| ||||| | ||||||||||| ||||||||||||||||||    
T  7022592 ttctcatataagtgcttaattataagctatttt-tataagaaaagataaaatagagtcaaattattttcata 7022662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 11917524 - 11917556
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataa 112  Q
    |||||||||||||||||||||||||||||||||    
T  11917524 aagataaaataaagtcaaattattttcatataa 11917556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 13949949 - 13949909
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  13949949 aagataaaataaagtcaaattgttttcatataagctataag 13949909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 24091434 - 24091478
Alignment:
Q  86 aaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||    
T  24091434 aaataaagtcaaattattttcatataagctataaactgttttcat 24091478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 54325142 - 54325034
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||||||||||||| | |||||||||||||| ||||||  |||||   || ||| | ||||||||| ||| || |  |||||| |||||||| ||    
T  54325142 aagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctatcatggagagtttatggagataaactgaaaacagcttatggac 54325043  T
Q  180 atgtcataa 188  Q
    || ||||||    
T  54325042 atatcataa 54325034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 55437388 - 55437356
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagct 115  Q
    |||||||||||||||||||||||||||||||||    
T  55437388 ataaaataaagtcaaattattttcatataagct 55437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 7694116 - 7694009
Alignment:
Q  79 gaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaa 178  Q
    |||||| |||| |||||||| | ||||  |||||||| ||||||| ||||||  |  ||||| ||||||||| |||||| |  |||||| | ||||||||    
T  7694116 gaagatgaaatgaagtcaaactgtttttgtataagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatgaa 7694017  T
Q  179 catgtcat 186  Q
    ||||||||    
T  7694016 catgtcat 7694009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 20936119 - 20936072
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||| | ||||||||||||||||||| ||||||||| ||||||    
T  20936119 tttctataacaaaagataaaataaagtcaaactattttcatgtaagct 20936072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 30024653 - 30024700
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  30024653 tttctataacaaaagataaaataaagtaaaattgttttcatataagct 30024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 32724084 - 32724123
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaa 119  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  32724084 aagataaaataaagtcaaactattttcatataagccgtaa 32724123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 2874646 - 2874608
Alignment:
Q  163 gaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  2874646 gaaaatagattatggacatgtcataagttgtttccataa 2874608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 5219615 - 5219573
Alignment:
Q  70 tctataatagaagataaaataaagtcaaattattttcatataa 112  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||    
T  5219615 tctataataaaagataaaataaagttaaactattttcatataa 5219573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 21952930 - 21952968
Alignment:
Q  84 taaaataaagtcaaattattttcatataagctgtaagct 122  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  21952930 taaaataaagtcaaattgttttcatataagctataagct 21952968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 22666844 - 22666710
Alignment:
Q  67 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaa 166  Q
    |||||| ||| | |||||||||||| |||||| | |||||| |||| || ||| ||  ||||||  |||| ||   ||||| || |||||| |  |||||    
T  22666844 ttttctgtaacacaagataaaataaggtcaaactgttttcagataatctataaactattttcataagcaaaccagtagagtgtatggaaataaactgaaa 22666745  T
Q  167 atagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||||||||||||| ||||||||| ||| |||||    
T  22666744 atagcttatgaacatatcataagtttttttcataa 22666710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 27623668 - 27623706
Alignment:
Q  169 agcttatgaacatgtcataagttgtttccataaattttc 207  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  27623668 agcttatgagcatgtcataggttgtttccataaattttc 27623706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 35958608 - 35958690
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagttta 150  Q
    ||||||||| | ||| |||||||||||||||||  ||| |||||||||  |||||| ||||||  || ||||| |||||||||    
T  35958608 tttctataacataagttaaaataaagtcaaatttgttttatataagctagaagctgttttcataagctatcctggagagttta 35958690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 1965990 - 1966027
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  1965990 aaaacagcttatgaacatgtcataagttgttttcataa 1966027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 22684617 - 22684584
Alignment:
Q  84 taaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||||||||||| ||||||||||||||||    
T  22684617 taaaataaagtcaaattgttttcatataagctgt 22684584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 27725251 - 27725300
Alignment:
Q  152 ggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||| | |||||||||| ||||| |||||||||||||| |||||||||    
T  27725251 ggaaatcatttgaaaatagtttatggacatgtcataagttatttccataa 27725300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 29467673 - 29467620
Alignment:
Q  136 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataag 189  Q
    ||||||||||||||| |||||| |  |||||| |||||||| ||||||||||||    
T  29467673 atcctagagagtttatggaaataagctgaaaacagcttatggacatgtcataag 29467620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 30207719 - 30207569
Alignment:
Q  37 cacttctcatataagtgcttat--atatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgc 134  Q
    ||||| ||||||||||||||||  |||||||| || |||||| | || |||||||||| ||||| | |||||||||||||| |||| || ||||||  ||    
T  30207719 cacttatcatataagtgcttatgtatatgttagtt-ctataacaaaaaataaaataaa-tcaaactgttttcatataagctataagttgttttcataagc 30207622  T
Q  135 aatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcata 187  Q
     | | ||||||| ||| |||||| |  |||||| ||||||   ||||||||||    
T  30207621 taccttagagagattatggaaataagctgaaaacagcttacagacatgtcata 30207569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 31038984 - 31038939
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataag 113  Q
    |||||| ||||  |||||||||||||||||||| ||||||||||||    
T  31038984 tttctacaataatagataaaataaagtcaaattgttttcatataag 31038939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 41701546 - 41701509
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgt 117  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  41701546 aagataaaataaagtcaaatcgttttcatataagctgt 41701509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 44319914 - 44320035
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||||||||||| || | ||||||||||||||  |||||  ||| ||  || ||||||||||  ||| | |||||| |||||||||||| ||| |     
T  44319914 aagataaaataaagtcgaactgttttcatataagctacaagctattttgataagctatcctagagaacttatgaaaattagttgaaaatagctaatggat 44320013  T
Q  180 atgtcataagttgtttccataa 201  Q
    |  |||||| |||||| |||||    
T  44320014 acatcataatttgttttcataa 44320035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 52294106 - 52294042
Alignment:
Q  47 ataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcata 109  Q
    ||||||||||||||||  ||| ||||||||||   ||||||||||||||| ||||| ||||||||    
T  52294106 ataagtgcttatatataagttgttttctataaccaaagataaaataaagtgaaattgttttcata 52294042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 52735087 - 52735120
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataag 113  Q
    |||||||||||||||||||||| |||||||||||    
T  52735087 aagataaaataaagtcaaattactttcatataag 52735120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 27623600 - 27623640
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||||||||||||| |||||| ||||||||| ||||    
T  27623600 aagataaaataaagtcaaactattttaatataagctataag 27623640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 41097280 - 41097240
Alignment:
Q  161 ttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||||||||||| ||||||||| ||||||||| ||||    
T  41097280 ttgaaaatagcttatggacatgtcattagttgtttctataa 41097240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 6600 - 6476
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctgatttcattt-----gcaatcctagagagtttacggaaattacttgaaaatagcttatga 177  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||||||     |||||||  ||||| ||| |||||| |  |||||| | |||||      
T  6600 ataaaataaagtcaaactattttcatataagctataagct-atttcatttcataagcaatcccggagagcttatggaaataaactgaaaacaacttatag 6502  T
Q  178 acatgtcataagttgtttccataaat 203  Q
    |||||||||| |||||||| ||||||    
T  6501 acatgtcataggttgtttctataaat 6476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 13620 - 13496
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctgatttcattt-----gcaatcctagagagtttacggaaattacttgaaaatagcttatga 177  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||||||     |||||||  ||||| ||| |||||| |  |||||| | |||||      
T  13620 ataaaataaagtcaaactattttcatataagctataagct-atttcatttcataagcaatcccggagagcttatggaaataaactgaaaacaacttatag 13522  T
Q  178 acatgtcataagttgtttccataaat 203  Q
    |||||||||| |||||||| ||||||    
T  13521 acatgtcataggttgtttctataaat 13496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 32172618 - 32172739
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    |||||||||| ||||||| || ||| |||||||||| ||||||| ||||||  || ||| |  |||  | | |||||| |  ||||||| ||||||| ||    
T  32172618 aagataaaatgaagtcaagttgtttacatataagctataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaatggcttatggac 32172717  T
Q  180 atgtcataagttgtttccataa 201  Q
    ||||||||||||||||||||||    
T  32172718 atgtcataagttgtttccataa 32172739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 36542362 - 36542265
Alignment:
Q  105 tcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataaa 202  Q
    ||||||||||| |||||||||| |||  || ||||||||||| ||  |||||| | || |||| ||||| || |||||||||||| ||||||||||||    
T  36542362 tcatataagctataagctgattccataagctatcctagagagcttgtggaaataagttaaaaacagcttctggacatgtcataagatgtttccataaa 36542265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 14295459 - 14295519
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttc 128  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||||| ||||||| ||||    
T  14295459 tttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 35135779 - 35135727
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||| ||||    
T  35135779 tttctataacaaaagataaaataaagtcaaactattttcatataagctataag 35135727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 10272542 - 10272415
Alignment:
Q  74 taatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagctt 173  Q
    ||||| |||||||||| |||||||||| ||||| |||||||| |||| || ||||||  || ||| | ||||||||| | |||| |  |||||| | |||    
T  10272542 taataaaagataaaattaagtcaaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaactt 10272443  T
Q  174 atgaacatgtcataagttgtttccataa 201  Q
    |   ||||||||||||||||||| ||||    
T  10272442 acagacatgtcataagttgtttctataa 10272415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 32969234 - 32969187
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||    
T  32969234 tttctataacaaaagataaaataaagtcaaattatttttatataagct 32969187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 32059694 - 32059644
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||||||| | |||||||||||||| ||||||| ||||||    
T  32059694 aagataaaataaagtcaaactgttttcatataagctataagctgttttcat 32059644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 35960367 - 35960428
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||| ||||||||||||||||||| || |||||||||| || |||| |||||||||    
T  35960367 tttctataataaaagataaaataaagtcaaacta-tttcatataaactataagttgatttcat 35960428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 37063191 - 37063129
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||| ||  ||||| ||||||    
T  37063191 tttctataacaaaagataaaataaagtcaaactattttcatataagttgccagctggtttcat 37063129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 15003619 - 15003502
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 179  Q
    ||||||||||||| ||||| | | |||||||||||| ||||  | ||||||  || |||| |||||| ||| |||||| | | ||||| | |||| ||||    
T  15003619 aagataaaataaaatcaaactctcttcatataagctataagtggttttcataagctatccaagagagcttatggaaataaatcgaaaacaacttacgaac 15003520  T
Q  180 atgtcataagttgtttcc 197  Q
    ||||| ||||||||||||    
T  15003519 atgtcgtaagttgtttcc 15003502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 28586883 - 28586750
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||  | ||||||| ||| |   || ||||||||||| |||  ||||| |  ||||||    
T  28586883 tttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgttttgacgagctatcctagagagcttatcgaaataagctgaaaa 28586784  T
Q  168 tagcttatgaacatgtcataagttgtttccataa 201  Q
     |||||| | | |||||||||| | |||||||||    
T  28586783 cagcttacggatatgtcataagctatttccataa 28586750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 34205206 - 34205327
Alignment:
Q  82 gataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcct-agagagtttacggaaattact-tgaaaatagcttatgaac 179  Q
    |||||| ||||||||||||||||| ||||||||| |||| || ||||||  || ||| | | | || ||| |||||| | | |||||| | |||||||||    
T  34205206 gataaagtaaagtcaaattatttttatataagctataagttgttttcataagctatcttgaaaaagcttatggaaataaatgtgaaaacaacttatgaac 34205305  T
Q  180 atgtcataagttgtttccataa 201  Q
    ||| ||||||||||||||||||    
T  34205306 atgacataagttgtttccataa 34205327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 583886 - 583838
Alignment:
Q  72 tataatagaagataaaataaagtcaaattattttcatataagctgtaag 120  Q
    ||||| ||||||||||||||||||||| | |||||||||||||| ||||    
T  583886 tataacagaagataaaataaagtcaaactgttttcatataagctataag 583838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 11700401 - 11700361
Alignment:
Q  162 tgaaaatagcttatgaacatgtcataagttgtttccataaa 202  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  11700401 tgaaaacagcttatggacatgtcataagttgtttccataaa 11700361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 8158406 - 8158371
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagct 115  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8158406 aagataaaataaagttaaattattttcatataagct 8158371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 36796808 - 36796757
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgc 134  Q
    ||||||||| || |||||||||||| ||||||| ||||||| ||||||||||    
T  36796808 ataaaataaggttaaattattttcacataagctataagctgttttcatttgc 36796757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 37611258 - 37611199
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||| ||| |||||| || |||||| ||||||||||||||||| ||||||||| |||||    
T  37611258 gagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataa 37611199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 37787988 - 37787929
Alignment:
Q  142 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    ||||| ||| |||||| || |||||| ||||||||||||||||| ||||||||| |||||    
T  37787988 gagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataa 37787929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 38047960 - 38047929
Alignment:
Q  80 aagataaaataaagtcaaattattttcatata 111  Q
    ||||||||||||||||||||||||||||||||    
T  38047960 aagataaaataaagtcaaattattttcatata 38047929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 9202853 - 9202803
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||||||||| ||||| |||||||||||||  ||||||| ||||||    
T  9202853 aagataaaataaagttaaattgttttcatataagcaataagctgttttcat 9202803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 12595857 - 12595795
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    ||||||||| | ||||||||||||||| ||||| ||||||||||| || | ||||| ||||||    
T  12595857 tttctataacaaaagataaaataaagttaaattgttttcatataaactatgagctggtttcat 12595795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 12425536 - 12425585
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataagctgtaagctgatttca 129  Q
    ||||||||||||||| ||||| ||||| |||||||| ||||||| |||||    
T  12425536 aagataaaataaagttaaattgttttcgtataagctataagctgttttca 12425585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 29117056 - 29117000
Alignment:
Q  58 tatatgttattttctataatagaagataaaataaagtcaaattattttcatataagct 115  Q
    |||||||||||| |||||| | ||||||||||||||||||| | ||||| ||||||||    
T  29117056 tatatgttattt-ctataacaaaagataaaataaagtcaaactgttttcgtataagct 29117000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 36638734 - 36638819
Alignment:
Q  102 ttttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcata 187  Q
    |||||||||||||   |||||| ||||||  |  ||||||||||| ||| |||||| |  |||||| |||||||||||||||||||    
T  36638734 ttttcatataagcctaaagctgttttcataagttatcctagagagcttatggaaataagctgaaaaaagcttatgaacatgtcata 36638819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 37588477 - 37588352
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 167  Q
    ||||||||||| |||||||||| || |||||   |||||||||||||| |||| || ||||||  |  || || ||||| ||| |||||| |  ||||||    
T  37588477 tttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaa 37588378  T
Q  168 tagcttatgaacatgtcataagttgt 193  Q
     ||||||| ||||| ||||| |||||    
T  37588377 cagcttattaacatttcataggttgt 37588352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 37794719 - 37794682
Alignment:
Q  164 aaaatagcttatgaacatgtcataagttgtttccataa 201  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  37794719 aaaacagcttatgaacatgtcataagttgttttcataa 37794682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 39750108 - 39750141
Alignment:
Q  80 aagataaaataaagtcaaattattttcatataag 113  Q
    ||||||||||||||||||| ||||||||||||||    
T  39750108 aagataaaataaagtcaaactattttcatataag 39750141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 10303754 - 10303794
Alignment:
Q  68 tttctataatagaagataaaataaagtcaaattattttcat 108  Q
    ||||||||| | ||||||||||||||||||||| |||||||    
T  10303754 tttctataacaaaagataaaataaagtcaaattgttttcat 10303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 11457152 - 11457184
Alignment:
Q  169 agcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||| ||||||||||||||||||||||||    
T  11457152 agcttatggacatgtcataagttgtttccataa 11457184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 12975315 - 12975355
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctg 123  Q
    |||||||||| ||||||| |||||||||||||| |||||||    
T  12975315 ataaaataaaatcaaattgttttcatataagctataagctg 12975355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 17756872 - 17756808
Alignment:
Q  43 tcatataagtgcttatatatgttat-tttctataatagaagataaaataaagtcaaattattttc 106  Q
    |||||||||||||||| ||||   | ||||| ||| ||||||||||||||||||||||| |||||    
T  17756872 tcatataagtgcttatgtatgagttgtttctttaacagaagataaaataaagtcaaattgttttc 17756808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 38047895 - 38047863
Alignment:
Q  169 agcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||| ||||||||||||||||||||||||    
T  38047895 agcttatggacatgtcataagttgtttccataa 38047863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 40499742 - 40499710
Alignment:
Q  169 agcttatgaacatgtcataagttgtttccataa 201  Q
    |||||||| ||||||||||||||||||||||||    
T  40499742 agcttatggacatgtcataagttgtttccataa 40499710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 34110 - 34072
Alignment:
Q  72 tataatagaagataaaataaagtcaaattattttcatat 110  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  34110 tataataaaagataaaataaagtcaaattattttcatat 34072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 1259 - 1145
Alignment:
Q  3 tggataaacaacttaattaag--cttacaacatagacacttctcatataagtgctta--tatatgttattttctataatagaagataaaataaagtcaaa 98  Q
    |||||||||||||||||||||  |||| | |||| ||   | |||||||||||||||  |||| | || ||||||||| | |||||||||||||||||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaa 1161  T
Q  99 ttattttcatataagc 114  Q
     |||| ||||||||||    
T  1160 ctattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 2716 - 2830
Alignment:
Q  3 tggataaacaacttaattaag--cttacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaa 98  Q
    |||||||||||||||||||||  |||| | |||| ||   | |||||||||||||||| |||  | ||||| |||||| | |||||||||||||||||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctattt-ctataacaaaagataaaataaagtcaaa 2814  T
Q  99 ttattttcatataagc 114  Q
     |||| ||||||||||    
T  2815 ctattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 69045 - 69005
Alignment:
Q  83 ataaaataaagtcaaattattttcatataagctgtaagctg 123  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  69045 ataaaataaagtcaaattattttcatataagcaataagctg 69005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 1866 - 1779
Alignment:
Q  44 catataagtgcttatatatgttatt-ttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||||||||||   ||  |||||||| | ||||||||||||||| || ||||||||||||| ||| |||| || ||||||    
T  1866 catataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 1779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 3956 - 3869
Alignment:
Q  44 catataagtgcttatatatgttatt-ttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 130  Q
    |||||||||||||||||||   ||  |||||||| | ||||||||||||||| || ||||||||||||| ||| |||| || ||||||    
T  3956 catataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 3869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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