View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_19 (Length: 365)
Name: NF9223_low_19
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 21942679 - 21942987
Alignment:
| Q |
1 |
atcgcccatccatggaagatgctctgaagcttttatcagggttaaagcgttcagaagctgacaaaacttataaataagggaaataaaagaaattcccatt |
100 |
Q |
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| T |
21942679 |
atcgcccatccatggaagatgctctgaagcttttatcagggttaaagcgttccgaagatgacaaaacttctaaataagggaaataaaagaaattcccatt |
21942778 |
T |
|
| Q |
101 |
ttcatcaaagtgttgaaagccattagaaacctataatttgcctggctaacaagtttgcaaatgtgtaattacctgagtttgtagcttgtataatatatat |
200 |
Q |
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| T |
21942779 |
ttcatcaaagtgttgaaagccattaaaaacctataatttgcctggctaacaagtttgcatatgtgtaattacatgagtttgtagcttgtataatacatat |
21942878 |
T |
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| Q |
201 |
ttccattgtttcagtgtgccatataactatgtcttagtctccctccctcaaaatccacttggtaaaaatacttaaaatggtattaatttaattacataat |
300 |
Q |
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| T |
21942879 |
ttacattgtttcagtgtgccatataactatgtctcagtctccctccctc--aatccacttagt-aaaatacttaaaatggtattaatttgattacataag |
21942975 |
T |
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| Q |
301 |
atatatgattca |
312 |
Q |
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|||| ||||||| |
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| T |
21942976 |
atatgtgattca |
21942987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 10799460 - 10799296
Alignment:
| Q |
63 |
aaaacttataaataagggaaataaaagaaattcccattttcatcaaagtgttgaaagccattagaaacc-tataatttgcctggctaacaagtttgcaaa |
161 |
Q |
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||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |||||| ||| ||| ||| ||||||||||| |
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| T |
10799460 |
aaaacttctaaataagggaaataaaaaaaattctcatttgcatcaaagtgttgaaagccattagaaaatatataatatgcatggttaataagtttgcaaa |
10799361 |
T |
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| Q |
162 |
tgtgtaattacctgagtttgtagcttgtataatatatatttccattgtttcagtgtgccatataa |
226 |
Q |
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||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10799360 |
tgtgtaactgaatgagtttgtagcttgtataatacatatttccattgtttcagtgtgccatataa |
10799296 |
T |
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